View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16550_low_2 (Length: 518)
Name: NF16550_low_2
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16550_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 40661380 - 40661055
Alignment:
| Q |
16 |
atccaacgccgtcatgtttcaaaaataaaataattttcgggtgaaatgtagaatcttccaaggttcacgtgagattgaacaaacatcaccctaatccttg |
115 |
Q |
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| T |
40661380 |
atccaacgccgtcatgtttcaaaaataaaataattttcgggtgaaatgtagaatcttccaaggttcacgtgagattgaacaaacatcaccctaatccttg |
40661281 |
T |
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| Q |
116 |
agtcttggcaaatttctttcaagagatattcaattagagagccgatagaattggtttttgtggttgaatgcaacggcatatgaatgctcgtttaattttt |
215 |
Q |
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| T |
40661280 |
agtcttggcaaatttctttcaagagatattcaattagagagccgatagaattggtttttgtggttgaatgcaacggcatatgaatgctcgtttaattttg |
40661181 |
T |
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| Q |
216 |
gtttggttaggactattggtgaaataacttttttatttatagttgtttgtttgtaaatatttgtccctgcaagtcgtgttcaaattcgtttgacaagttt |
315 |
Q |
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| T |
40661180 |
gtttggttaggactattggtgaaataacttttttatttatagttgtttgtttgtaaatatttgtccctgcaagtcgtgttcaaattcgtttgacaagttt |
40661081 |
T |
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| Q |
316 |
ttcccaatgatgtttttacatgtaaa |
341 |
Q |
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| T |
40661080 |
ttcccaatgatgtttttacatgtaaa |
40661055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 339 - 502
Target Start/End: Complemental strand, 40661031 - 40660870
Alignment:
| Q |
339 |
aaagtgtgaaagaaaagaaactcatatatgttagtagtgtatgtatgtttttacgccgctttccttacgctcaatctctccatcaatctcactatctccc |
438 |
Q |
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| T |
40661031 |
aaagtgtgaaagaaaagaaactcatatatgttagtagtgtatttatgtttttacgccgctttccttacgctcaatctctccatcaatctcactatctccc |
40660932 |
T |
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| Q |
439 |
ttcattaaagataataagacaatcaagagagtgtgtgcgcgagattaagagagaaatagaaagt |
502 |
Q |
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| T |
40660931 |
ttcattaaagataataagacaatcaagagagtgtgt--gtgagattaggagagaaatagaaagt |
40660870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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