View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16550_low_3 (Length: 388)

Name: NF16550_low_3
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16550_low_3
NF16550_low_3
[»] chr3 (1 HSPs)
chr3 (15-371)||(49773146-49773502)
[»] chr7 (9 HSPs)
chr7 (67-194)||(39547484-39547611)
chr7 (88-194)||(39338731-39338837)
chr7 (85-171)||(39589335-39589421)
chr7 (88-197)||(39538023-39538132)
chr7 (67-194)||(39366063-39366190)
chr7 (88-197)||(39564260-39564369)
chr7 (91-171)||(39353577-39353657)
chr7 (91-197)||(39575071-39575177)
chr7 (91-194)||(1084820-1084923)
[»] chr2 (3 HSPs)
chr2 (79-200)||(44210993-44211114)
chr2 (79-200)||(44223155-44223276)
chr2 (79-167)||(44234010-44234098)
[»] chr4 (3 HSPs)
chr4 (79-167)||(2887022-2887110)
chr4 (82-167)||(2877258-2877343)
chr4 (94-167)||(2897266-2897339)
[»] chr1 (3 HSPs)
chr1 (67-213)||(2160835-2160981)
chr1 (317-371)||(2160464-2160518)
chr1 (85-174)||(19542696-19542785)
[»] chr8 (1 HSPs)
chr8 (85-174)||(43529464-43529553)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 49773146 - 49773502
Alignment:
Q  15 tctaatggatgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacatttgctcggata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49773146 tctaatggatgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacattttctcggata 49773245  T
Q  115 tcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcatggctccggttaccccccgaggttgata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49773246 tcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcatggctccggttaccccccgaggttgata 49773345  T
Q  215 cttctacaagaaaggtaaagtttgttaattttgtgtttctcttttactttgtagataaaatcagagtatattaacaagacatgcaacacacaccactaat 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49773346 cttctacaagaaaggtaaagtttgtcaattttgtgtttctcttttactttgtagataaaatcagagtatattaacaagacatgcaacacacaccactaat 49773445  T
Q  315 ttcagatgttcattgaggaagttatggagctgatagagctgacttcaataagagaag 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49773446 ttcagatgttcattgaggaagttatggagctgatagagctgacttcaataagagaag 49773502  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 39547611 - 39547484
Alignment:
Q  67 atcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatg 166  Q
    ||||| ||||| || || || ||||||||||| || |||||  | || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  39547611 atcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatg 39547512  T
Q  167 aatctcttgtttattctgcatggctccg 194  Q
    ||||| |  | ||||| |||||||||||    
T  39547511 aatctttgctctattcagcatggctccg 39547484  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 39338731 - 39338837
Alignment:
Q  88 aagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcat 187  Q
    |||||||||||||| |||||  | || || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |  | ||||| ||||    
T  39338731 aagaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcat 39338830  T
Q  188 ggctccg 194  Q
    |||||||    
T  39338831 ggctccg 39338837  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 39589421 - 39589335
Alignment:
Q  85 cctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatct 171  Q
    |||||||||||||||||||||||  | || || |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  39589421 cctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcctcatgttactgtatatgaatct 39589335  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 39538132 - 39538023
Alignment:
Q  88 aagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcat 187  Q
    ||||||||||| || |||||  | || ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||| |  | ||||| ||||    
T  39538132 aagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctccttatgttactgtctatgaatctttgctctattcagcat 39538033  T
Q  188 ggctccggtt 197  Q
    ||||||||||    
T  39538032 ggctccggtt 39538023  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 39366063 - 39366190
Alignment:
Q  67 atcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatg 166  Q
    ||||| ||||| || || || |||||||||||||| |||||  | || || |||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  39366063 atcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactgtctatg 39366162  T
Q  167 aatctcttgtttattctgcatggctccg 194  Q
    ||||| |  | ||||| |||||||||||    
T  39366163 aatctttactctattcagcatggctccg 39366190  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 39564369 - 39564260
Alignment:
Q  88 aagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcat 187  Q
    |||||||||||||| |||||  | || || || ||||||||||||| |||||||||||||||  |||||||||||||||||||| |  | ||||| ||||    
T  39564369 aagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatgatatccactctccttatgttactgtctatgaatctttgctctattcagcat 39564270  T
Q  188 ggctccggtt 197  Q
    ||||||||||    
T  39564269 ggctccggtt 39564260  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 39353577 - 39353657
Alignment:
Q  91 aagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatct 171  Q
    ||||||||||| |||||  | || || |||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  39353577 aagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctccttatgttactgtctatgaatct 39353657  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 39575177 - 39575071
Alignment:
Q  91 aagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcatggc 190  Q
    ||||||||||| |||||  | || || |||||||||||||||| |||||| |||||||| ||| |||| |||||||| ||| |  | ||||| |||||||    
T  39575177 aagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcctcatattacggtctatgagtctttgctctattcagcatggc 39575078  T
Q  191 tccggtt 197  Q
    |||||||    
T  39575077 tccggtt 39575071  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 1084923 - 1084820
Alignment:
Q  91 aagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcatggc 190  Q
    ||||||||||||||| |  | || || ||||||||||||||||  |||||||| ||||| ||| |||||||||| || ||| |  | ||||| |||||||    
T  1084923 aagcaagaaacatttacaagaatttctggatactgtgagcaaatagatatccattctcctcattttactgtctacgagtctttgctctattcagcatggc 1084824  T
Q  191 tccg 194  Q
    ||||    
T  1084823 tccg 1084820  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 44211114 - 44210993
Alignment:
Q  79 gggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgttt 178  Q
    ||||||||||| |||||||||||||||||| | ||||| || |||||||| || | |||||| || || || |||||||| || |||||||| ||| |||    
T  44211114 gggtaccctaaaaagcaagaaacatttgctagaatatctggctactgtgaacagaatgatattcattcacctcatgttacagtttatgaatcccttcttt 44211015  T
Q  179 attctgcatggctccggttacc 200  Q
    | || |||||||| || |||||    
T  44211014 actcagcatggcttcgtttacc 44210993  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 44223276 - 44223155
Alignment:
Q  79 gggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgttt 178  Q
    ||||||||||| |||||||||||||||||| | || || || ||||||||||| | ||||||||| || || |||||||| || ||||| ||| |  |||    
T  44223276 gggtaccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttacagtttatgagtctttgcttt 44223177  T
Q  179 attctgcatggctccggttacc 200  Q
    |||| || ||||| || |||||    
T  44223176 attcggcgtggcttcgtttacc 44223155  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 44234098 - 44234010
Alignment:
Q  79 gggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga 167  Q
    ||||| ||||| |||||||||||||||||| | || || || ||||||||||| | ||||||||| || || |||||||| || |||||    
T  44234098 gggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatga 44234010  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 2887022 - 2887110
Alignment:
Q  79 gggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga 167  Q
    ||||||||||| || |||||||| |||||||| || || || || |||||||| | ||||||||| ||||| |||||||||||||||||    
T  2887022 gggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 2887110  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 2877258 - 2877343
Alignment:
Q  82 taccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga 167  Q
    |||||||| |||||||||||||||||| | || || || || |||||||| | |||||||||||| || || ||||||||||||||    
T  2877258 taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatga 2877343  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 2897339 - 2897266
Alignment:
Q  94 caagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga 167  Q
    |||||||| |||||||| || || || || |||||||| | ||||||||| ||||| |||||||||||||||||    
T  2897339 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 2897266  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 2160981 - 2160835
Alignment:
Q  67 atcactatatccgggtaccctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatg 166  Q
    ||||| |||||||| || || ||||| ||| ||||||||||||| ||||| ||||| || ||||||  ||||||||| || ||  ||||||| || ||||    
T  2160981 atcacaatatccggctatccaaagaatcaaaaaacatttgctcgcatatcgggatattgcgagcaatttgatatccattcacctaatgttacagtttatg 2160882  T
Q  167 aatctcttgtt-tattctgcatggctccggttaccccccgaggttgat 213  Q
    ||||| ||||| ||||| |||||||| || ||||| || || ||||||    
T  2160881 aatct-ttgttatattcggcatggcttcgtttaccacctgaagttgat 2160835  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 2160518 - 2160464
Alignment:
Q  317 cagatgttcattgaggaagttatggagctgatagagctgacttcaataagagaag 371  Q
    |||||||| ||||||||||||||||||||  ||||||| | |||| |||||||||    
T  2160518 cagatgtttattgaggaagttatggagcttgtagagcttaattcattaagagaag 2160464  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 19542696 - 19542785
Alignment:
Q  85 cctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctctt 174  Q
    |||||||| |||| ||| |||||||||||    || || ||||| |||| |||||||||||||||| || |||| || ||||||||||||    
T  19542696 cctaagaaccaagcaacttttgctcggattagcggttattgtgaacaaaatgatatccactctcccaatattacagtttatgaatctctt 19542785  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 43529464 - 43529553
Alignment:
Q  85 cctaagaagcaagaaacatttgctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctctt 174  Q
    |||||||| |||| ||| |||||||||||    || || ||||| |||| |||||||||||||||| || |||| || ||||||||||||    
T  43529464 cctaagaaccaagcaacttttgctcggattagcggttattgtgaacaaaatgatatccactctcccaatattacagtttatgaatctctt 43529553  T

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