View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16550_low_5 (Length: 363)
Name: NF16550_low_5
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16550_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 1895901 - 1895556
Alignment:
| Q |
1 |
acataaagaaattaatcaagggtggcttttgttaaaatcacggtgaatttgacaaaatcttggtagcaccttgttgccaaaattcttgtagcgtgattct |
100 |
Q |
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| T |
1895901 |
acataaagaaattaatcaagggtggattttgttaaaatcacggtgaatttgagaaaatcttggtagcaccttgttgccaaaattcttatagcgtgattct |
1895802 |
T |
|
| Q |
101 |
gttaaactcaccgtcaattcaaacatttactaagttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtgaaccttctacttctagtg |
200 |
Q |
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| T |
1895801 |
gtcaaactcaccgtcaattcaaacatttactaagttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtgaaccttctacttctagtg |
1895702 |
T |
|
| Q |
201 |
aaaagtgtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaag |
300 |
Q |
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| T |
1895701 |
aaaagtgtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaag |
1895602 |
T |
|
| Q |
301 |
tgagtaaagccatttcaatagtttcctgtcctgtgatcactaaaat |
346 |
Q |
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| T |
1895601 |
tgagtaaagccatttcaatagtttcctgtcctatgatcactaaaat |
1895556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 1905706 - 1905506
Alignment:
| Q |
39 |
cacggtgaatttgacaaaatcttggtagcaccttgttgccaaaattcttgta----gcgtgattctgttaaactcaccgtcaattcaaacatttactaag |
134 |
Q |
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| T |
1905706 |
cacggtgaatttgacaaaatcgtggaagcaccgtgttgccaaaatcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaag |
1905607 |
T |
|
| Q |
135 |
ttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtgaaccttctacttctagtgaaaagtgtgacaggaagaagaacagaagtaccaa |
234 |
Q |
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||||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
1905606 |
ttatatacatatgttgtatgttgatgaatattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaacagaagtaccaa |
1905507 |
T |
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| Q |
235 |
c |
235 |
Q |
| |
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| |
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| T |
1905506 |
c |
1905506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 192 - 320
Target Start/End: Complemental strand, 1911166 - 1911038
Alignment:
| Q |
192 |
cttctagtgaaaagtgtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctt |
291 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||| ||||||| |
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| T |
1911166 |
cttctagtgaaaagagtgacagggagaagaacagaagtaccaacagcataagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctt |
1911067 |
T |
|
| Q |
292 |
tgaacaaagtgagtaaagccatttcaata |
320 |
Q |
| |
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|||||||||||||||||||||| |||||| |
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| T |
1911066 |
tgaacaaagtgagtaaagccatgtcaata |
1911038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 207 - 340
Target Start/End: Complemental strand, 1890845 - 1890712
Alignment:
| Q |
207 |
gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagta |
306 |
Q |
| |
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|||| |||||| |||| || |||||||| |||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1890845 |
gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta |
1890746 |
T |
|
| Q |
307 |
aagccatttcaatagtttcctgtcctgtgatcac |
340 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
1890745 |
aagccatttcaatagtttcctgtcctatgatcac |
1890712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 1884201 - 1884090
Alignment:
| Q |
207 |
gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagta |
306 |
Q |
| |
|
|||| |||||| |||| |||||| |||||||||||| ||| |||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
1884201 |
gtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagta |
1884102 |
T |
|
| Q |
307 |
aagccatttcaa |
318 |
Q |
| |
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||||||| |||| |
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| T |
1884101 |
aagccatgtcaa |
1884090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 1878189 - 1878084
Alignment:
| Q |
207 |
gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagta |
306 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||| ||||||||||||| | ||| ||| || |
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| T |
1878189 |
gtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgacta |
1878090 |
T |
|
| Q |
307 |
aagcca |
312 |
Q |
| |
|
|||||| |
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|
| T |
1878089 |
aagcca |
1878084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 1902083 - 1902000
Alignment:
| Q |
230 |
accaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccat |
313 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
1902083 |
accaacagcataagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccat |
1902000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 17240731 - 17240698
Alignment:
| Q |
93 |
gtgattctgttaaactcaccgtcaattcaaacat |
126 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
17240731 |
gtgattctgtcaaactcaccgtcaattcaaacat |
17240698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 7873144 - 7873192
Alignment:
| Q |
92 |
cgtgattctgttaaactcaccgtcaattcaaacatttactaagttatat |
140 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
7873144 |
cgtgattatgttaaactcaccgtcaatccaaacatgtactaagttatat |
7873192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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