View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_15 (Length: 445)
Name: NF16551_high_15
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 58 - 426
Target Start/End: Complemental strand, 34338577 - 34338209
Alignment:
| Q |
58 |
tagcaatgtcaccttcgatgtatttttcacgtaaaatcattgttgtggtgtttgtttcggccatgatgacatgcatctctaccaaaacaaacattataga |
157 |
Q |
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| T |
34338577 |
tagcaatgtcaccttcgatgtatttttcacgtaaaatcattgttgtggtgtttgtttcggccatgatgacatgcatctctaccaaaacaaacattataga |
34338478 |
T |
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| Q |
158 |
gcggtgttgagtctggaactgaatccatctccaccaccatcacatacttaggttcccttgtaagttgtaacatctttggtgatattcatctgtcacaagt |
257 |
Q |
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| T |
34338477 |
gcggtgttgagtctggaactgaatccacctccaccaccatcacatacttaggttcccttgtaagttgtaacatctttggtgatattcatctgtcacaagt |
34338378 |
T |
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| Q |
258 |
ttaatagattatttgtgtttggagttttagagaaataaggaagagacggctagggttttcaataattcaaaagattacgagacaatatatataataaaac |
357 |
Q |
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| T |
34338377 |
ttaatagattatttgtgtttggagttttagagaaataaggaagagacggctagggttttcaataagtcaaaagattacgagacaatatatataataaaac |
34338278 |
T |
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| Q |
358 |
ctaaaggactactaaattagaaatgtaaaacgtcattggcttcagcccaataactttattatttaacac |
426 |
Q |
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| T |
34338277 |
ctaaaggactactaaattagaaatgtaaaacgtcactggcttcagcccaataactttattatttaacac |
34338209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 34336072 - 34335996
Alignment:
| Q |
54 |
acattagcaatgtcaccttcgatgtatttttcacgtaaaatcattgttgtggtgtttgtttcggccatgatgacatg |
130 |
Q |
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| T |
34336072 |
acattaacgatgtcaccttcaatgtttttttcaccgaaaatcattgtcgtgatgtttgttttggccatgataacatg |
34335996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 322
Target Start/End: Original strand, 22552528 - 22552562
Alignment:
| Q |
288 |
agaaataaggaagagacggctagggttttcaataa |
322 |
Q |
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| T |
22552528 |
agaaataagaaagagacggctagggttttcaataa |
22552562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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