View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_16 (Length: 444)
Name: NF16551_high_16
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Complemental strand, 47620229 - 47619820
Alignment:
| Q |
10 |
attatactgcaggtagttacaaaaaatgaatggtgagaatatcaaacaccaaattaactgaatcccttattattagacttctatttaattaaacatacca |
109 |
Q |
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| T |
47620229 |
attatgctgcaggtagttacaaaaaatgaatggtgagaatatcaaacaccaaattaactgaatcccttattattagacttctatttaattaaacatacca |
47620130 |
T |
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| Q |
110 |
ttccagacattttcacctttcattctttatttcaattactcttcccttcacggcgacgcggcacggcgaggcagcttcctaactgcctcggctgtcacca |
209 |
Q |
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| T |
47620129 |
ttccagacattttcacctttcattctttatttcaattactcttcccttcacggcgacgcggcacggcgaggcagcttcctaactgcctcggctgtcacca |
47620030 |
T |
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| Q |
210 |
tcaccatcaccaccattactaattaatcatcaaaattcataattaatattatgagtagcgaggaaatagtgttacagggaggaggagtctgcgaaaacga |
309 |
Q |
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| T |
47620029 |
tcacca------ccattactaattaatcatcaaaattcataattaatattatgagtagcgaggaaatagtgttacagggaggaggagtctgcgaaaacga |
47619936 |
T |
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| Q |
310 |
gttttcagatcaagaggaagagttgcaacaggaacattctgatcagaaggccgaggcattggcgtttaagaaaaggaaacgtctaacaaagcaactatca |
409 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47619935 |
gttttcagatcaggaggaagagttgcaacaggaacattctgatcagaaggccgaggcattggcgtttaagaaaaggaaacgtctaacaaagcaactatca |
47619836 |
T |
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| Q |
410 |
atgtgtggaacaccag |
425 |
Q |
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| T |
47619835 |
atgtgtggaacaccag |
47619820 |
T |
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