View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_17 (Length: 422)
Name: NF16551_high_17
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 31438339 - 31437941
Alignment:
| Q |
18 |
acatattccttctgtagtagccattatcaaattggtatcaatcaagaaaactagttagtttatttttctaaattctagccataatgatgtttgcattaat |
117 |
Q |
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| T |
31438339 |
acatattccttctgtagtagccattatcaaattggtatcaatcaagaaaactagttagtttatttttctaaattctagccataatgatgtttgcattaat |
31438240 |
T |
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| Q |
118 |
tcaaagtttaattgagttctacaaggaagaaaattgatctgagctatgaagtgtgcagcttaccaataaaagctgaaattccaactccaattgcaacaca |
217 |
Q |
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| T |
31438239 |
tcaaagtttaattgagttctacaaggaagaaaattgatctgagctatgaagtgtgcagcttaccaataaaagctgaaattccaactccaattgcaacaca |
31438140 |
T |
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| Q |
218 |
taataacttcaatgcaaactgaaaaaaggaaagtaaaatgttatatcaaaaactgttgattaatcatgtccggaaaataaaatagtgacataaataaagt |
317 |
Q |
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| T |
31438139 |
taatagcttcaatgcaaactgaaaaaaggaaagtaaaatgttatatcaaaaactgttgattaatcatgtccggaaaataaaattgtgacataaataaagt |
31438040 |
T |
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| Q |
318 |
ttcacgactccttagacataaatgaaaaaagagtagtaattttattgaacaagctcaccttgttcacatcatgttgatttaaacggctattcttctctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31438039 |
ttcacgactccttagacataaatgaaaaaagagtagtaattttattgaacaagctcaccttgttcacatcatgttgatttaaacggctattcttatctc |
31437941 |
T |
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