View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_20 (Length: 415)
Name: NF16551_high_20
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 38224913 - 38224522
Alignment:
| Q |
1 |
aattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccctcaaatttatacacacgtatataa |
100 |
Q |
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| T |
38224913 |
aattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccctcaaatttatacacacgtatataa |
38224814 |
T |
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| Q |
101 |
ctataaatagaattttgctagccagaacaaattcatacttcagaggtgtaacaatttaccatattctaaggtccaggtattgtttcctttagtcttgata |
200 |
Q |
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| T |
38224813 |
ctataaatagaattttgctagccagaacaaattcatacttcagaggtggaacaatttaccatagtctaaggtccaggtattgtttcctttagtcttgata |
38224714 |
T |
|
| Q |
201 |
ttattaacgtgcatataaagtattgatgattgatgt-attattttattatatggtccataatgatggacaacgttacatgcattgaattattttatcaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38224713 |
ttattaacgtgcatataaagtattgatgattgatgtaattattttat--tatggtccataatgatggacaacgttatatgcattgaattattttatcaca |
38224616 |
T |
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| Q |
300 |
aacccatgaaatgattgatgatcaaatttcctagcatttaattctgtgatcaacaagtatgtctttcttatggtcaaatttggtgtgttgatgg |
393 |
Q |
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| T |
38224615 |
aacccatgaaatgattgatgatcaaatttcctagcatttaattctgtgatcaacaagtatgtctttcttatggtcaaatttggtgtgttgatgg |
38224522 |
T |
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