View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16551_high_24 (Length: 389)

Name: NF16551_high_24
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16551_high_24
NF16551_high_24
[»] chr8 (13 HSPs)
chr8 (1-389)||(44913013-44913402)
chr8 (97-261)||(41945856-41946020)
chr8 (152-263)||(201635-201746)
chr8 (152-263)||(316472-316583)
chr8 (152-263)||(30409754-30409865)
chr8 (152-382)||(43811314-43811545)
chr8 (154-263)||(1287424-1287533)
chr8 (176-263)||(28647030-28647117)
chr8 (305-382)||(10683420-10683497)
chr8 (32-125)||(17785919-17786012)
chr8 (304-382)||(201515-201593)
chr8 (304-382)||(316352-316430)
chr8 (304-382)||(30409634-30409712)
[»] chr3 (6 HSPs)
chr3 (1-389)||(22931131-22931510)
chr3 (91-263)||(21847662-21847834)
chr3 (154-261)||(9698178-9698285)
chr3 (152-389)||(54171168-54171406)
chr3 (176-261)||(43548334-43548419)
chr3 (304-382)||(21847876-21847954)
[»] chr4 (7 HSPs)
chr4 (91-383)||(20290036-20290329)
chr4 (19-263)||(31355141-31355385)
chr4 (152-263)||(44147653-44147764)
chr4 (154-261)||(27186736-27186843)
chr4 (154-263)||(43683130-43683239)
chr4 (163-268)||(53977457-53977562)
chr4 (304-382)||(44147806-44147884)
[»] chr5 (13 HSPs)
chr5 (152-382)||(37659322-37659553)
chr5 (152-263)||(7103325-7103436)
chr5 (152-263)||(16794764-16794875)
chr5 (187-389)||(30047949-30048151)
chr5 (152-382)||(12019384-12019615)
chr5 (154-263)||(30695893-30696002)
chr5 (154-261)||(10275134-10275241)
chr5 (166-263)||(40371198-40371295)
chr5 (305-385)||(16598202-16598282)
chr5 (18-293)||(15066729-15067003)
chr5 (304-382)||(7103205-7103283)
chr5 (304-382)||(16794917-16794995)
chr5 (304-382)||(40371078-40371156)
[»] chr6 (7 HSPs)
chr6 (154-261)||(21416559-21416666)
chr6 (61-263)||(8319455-8319657)
chr6 (166-263)||(27571683-27571780)
chr6 (61-254)||(14531265-14531458)
chr6 (154-263)||(17881430-17881539)
chr6 (304-382)||(8319335-8319413)
chr6 (304-382)||(27571563-27571641)
[»] chr2 (6 HSPs)
chr2 (152-263)||(8051487-8051598)
chr2 (152-263)||(36671146-36671257)
chr2 (61-261)||(13270481-13270681)
chr2 (3-113)||(25268685-25268795)
chr2 (304-382)||(8051640-8051718)
chr2 (304-382)||(36671299-36671377)
[»] chr7 (5 HSPs)
chr7 (61-263)||(27757401-27757603)
chr7 (152-263)||(7944034-7944145)
chr7 (304-388)||(730356-730440)
chr7 (304-382)||(7943914-7943992)
chr7 (237-266)||(729995-730024)
[»] scaffold0044 (2 HSPs)
scaffold0044 (152-263)||(48816-48927)
scaffold0044 (304-382)||(48696-48774)
[»] chr1 (3 HSPs)
chr1 (61-263)||(39794399-39794601)
chr1 (154-263)||(26312110-26312219)
chr1 (304-382)||(39794643-39794721)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 44913402 - 44913013
Alignment:
Q  1 gccatgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44913402 gccatgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcac 44913303  T
Q  101 aagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactg 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44913302 aagatttgctggaaattgtgcaaaacgattatgatgaatttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactg 44913203  T
Q  201 caaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttggatattc-tgaaaga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44913202 caaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttggatattcttgaaaga 44913103  T
Q  300 tgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaag 389  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44913102 tgttatgaaggtgatgctaaggtgaaagagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaag 44913013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 261
Target Start/End: Original strand, 41945856 - 41946020
Alignment:
Q  97 gcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaagaagg 196  Q
    |||||||||||||||||||||||||| || | |   ||||| || | ||  ||| | ||||| ||||| ||||| ||| |||| ||||| |||||||| |    
T  41945856 gcacaagatttgctggaaattgtgcagaatggtgtagatgaattagctgcgaataccactgatgtgcaaaggaacgcacacaaggaattgaagaagaaag 41945955  T
Q  197 actgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaa 261  Q
    | |||||||| |||||||| |||||||||||| | |||  |||||| ||||||||||||||||||    
T  41945956 attgcaaggctcttttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaa 41946020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 201746 - 201635
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  201746 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 201647  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  201646 aatctcaaaatc 201635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 316583 - 316472
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  316583 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 316484  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  316483 aatctcaaaatc 316472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 30409865 - 30409754
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  30409865 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 30409766  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  30409765 aatctcaaaatc 30409754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 382
Target Start/End: Complemental strand, 43811545 - 43811314
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||  | |||  |||||| ||||||||    
T  43811545 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagccttgatgaaggaaactttgaaag 43811446  T
Q  252 aatctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaa 348  Q
    ||||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | |    
T  43811445 aatctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctga 43811348  T
Q  349 gaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||| || |||||| |||||||||||||||||||    
T  43811347 gaaggaaatttgaattgatgcaaatggaagatga 43811314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 1287424 - 1287533
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||||||||| ||||| ||| |||| |||| ||||||||| || ||||||||  | ||||| |||||||||||| | |||  |||||| ||||||||||    
T  1287424 actgaggtgcaaaggaacgcacacaaggaatataagaagaaagattgcaaggctttgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 1287523  T
Q  254 tctcaaaatc 263  Q
    ||||||||||    
T  1287524 tctcaaaatc 1287533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 28647030 - 28647117
Alignment:
Q  176 acaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatc 263  Q
    |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||||||||||||    
T  28647030 acaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaatc 28647117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 10683497 - 10683420
Alignment:
Q  305 tgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||  ||||||||| |||| |||||||||||| ||||||| || ||| || ||||||| |||||||||||    
T  10683497 tgaaggtgatgaaaaggtgaagcagatcaagcttcagtctctaagaaggaaatttaaactgatgcagatggaagatga 10683420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 17786012 - 17785919
Alignment:
Q  32 atcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattgtgcaaaa 125  Q
    ||||||||| ||||||| |   ||| || ||||| ||| ||||| | ||||||||  |||||||||||||||||| | ||||||||||||||||    
T  17786012 atcttccaattcttgaaggacaaaattgggaaagatggagtgcagtgatgaagaatctttttggggcacaagattggttggaaattgtgcaaaa 17785919  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 201593 - 201515
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  201593 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 201515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 316430 - 316352
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  316430 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 316352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 30409712 - 30409634
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  30409712 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 30409634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 22931510 - 22931131
Alignment:
Q  1 gccatgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcac 100  Q
    ||||||||||  |||| ||||||||||||  |||||||||| |||||||||||||| || ||||| ||| |||   | ||||||||  | |||||||||     
T  22931510 gccatgaatggtaacagcagtttcaatactcatcttccaacccttgaaagtggaaattgggaaagttggagtgttgtgatgaagaatctgtttggggcaa 22931411  T
Q  101 aagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactg 200  Q
    | |||||  |  | ||||||||||||| |||||||||  | ||||||||| |||||||| |||| |||||||||||||| || || ||||||||||| ||    
T  22931410 aggatttatttaatattgtgcaaaacggttatgatgaactgggtgaaaatcctactgagatgcataggaatgcatacaaggagttaaagaagaaggattg 22931311  T
Q  201 caaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttggatattc-tgaaaga 299  Q
     ||| || | |||||||||          | | |  |||||| ||||  ||||| || ||||||||||  || || || |||| |||||||| |||| |     
T  22931310 taagacattgttcttcatt----------ttgttggaggaaactttgtgagaatttctaaatccacaagatcaaatgaagcttgggatattcttgaatgg 22931221  T
Q  300 tgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaag 389  Q
    |   ||||||| ||||||||||||||| |||||||||||||||  |||||||| || |||||  |||||||||||||||||||| |||||    
T  22931220 taccatgaaggagatgctaaggtgaagcagataaagcttcagttattaagaaggaaatttgagttgatgcaaatggaagatgagaaaaag 22931131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 263
Target Start/End: Original strand, 21847662 - 21847834
Alignment:
Q  91 tttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaaga 190  Q
    ||||| |||||||||||||| ||||||||||| || | |   ||||| || | ||  ||| | ||||| ||||| ||||| ||| |||| ||||| ||||    
T  21847662 tttggagcacaagatttgcttgaaattgtgcagaatggtgtagatgaattagctgcgaatgccactgaagtgcaaaggaacgcacacaaggaattgaaga 21847761  T
Q  191 agaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatc 263  Q
    |||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||||||||||||    
T  21847762 agaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaatc 21847834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 9698178 - 9698285
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  9698178 actgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 9698277  T
Q  254 tctcaaaa 261  Q
    ||||||||    
T  9698278 tctcaaaa 9698285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 389
Target Start/End: Complemental strand, 54171406 - 54171168
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| | || ||||| ||||| || || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  54171406 ctactgaggtgcaaaggaacgcacataaggaattgaagaaaaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 54171307  T
Q  252 aatctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaa 348  Q
    ||||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | |    
T  54171306 aatctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctga 54171209  T
Q  349 gaagaaagtttgaaatgatgcaaatggaagatgagcaaaag 389  Q
    |||| || |||||  ||||||||||||||||||| ||||||    
T  54171208 gaaggaaatttgagctgatgcaaatggaagatgatcaaaag 54171168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 43548334 - 43548419
Alignment:
Q  176 acaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaa 261  Q
    |||| ||||| |||||||| || ||||||||  | ||||| |||||||||||| | |||  |||||| ||||||||||||||||||    
T  43548334 acaaggaattgaagaagaaagattgcaaggctgtgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaa 43548419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 21847876 - 21847954
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  21847876 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 21847954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 383
Target Start/End: Original strand, 20290036 - 20290329
Alignment:
Q  91 tttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaaga 190  Q
    |||| ||||||||||||  |||| ||||||||||||| |||   |||  | ||||  ||| | ||||| ||||| ||||||||| | ||||| || ||||    
T  20290036 tttgaggcacaagatttattggagattgtgcaaaacggttacattgatataggtgctaatgcaactgaagtgcataggaatgcacataaagagttaaaga 20290135  T
Q  191 agaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttggatat 290  Q
    ||||||| ||||||| | | ||| |||||||| | ||| | |||  |||||| ||| ||||||| || ||||||||||  || ||||| ||||   ||||    
T  20290136 agaaggattgcaaggaattgttcctcattcaatagagtcttgatgaaggaaactttaaaagaatttctaaatccacaagatcaaaggaagcttcaaatat 20290235  T
Q  291 tctg-aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgag 383  Q
    |||| ||| || | |||||||||||| ||||||| || |||||||||||||||| || ||||| |||||| || ||||||||||||| ||||||    
T  20290236 tctggaaaaatatcatgaaggtgatgataaggtggagcagataaagcttcagtcattgagaaggaagtttaaattgatgcaaatggaggatgag 20290329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 31355141 - 31355385
Alignment:
Q  19 agtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattg 118  Q
    |||||||| ||  ||||||||| |||||||    ||||||| ||||| |||  |||||| ||||||||    ||||| ||||||||||||||||||||||    
T  31355141 agtttcaacactcatcttccaattcttgaagcaagaaactgggaaagatggaatgcactgatgaagaatcagtttggagcacaagatttgctggaaattg 31355240  T
Q  119 tgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcat 218  Q
    |||| || | |   ||||| || | ||  ||| | ||| ||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| ||    
T  31355241 tgcagaatggtgtagatgaattagctgtgaatgccactaaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgat 31355340  T
Q  219 tcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatc 263  Q
    |||||||||| | |||  |||||| |||| |||||||||||||||    
T  31355341 tcaacaaagtcttgatgaaggaaactttggaagaatctcaaaatc 31355385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 44147653 - 44147764
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  44147653 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 44147752  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  44147753 aatctcaaaatc 44147764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 27186736 - 27186843
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  27186736 actgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 27186835  T
Q  254 tctcaaaa 261  Q
    ||||||||    
T  27186836 tctcaaaa 27186843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 43683239 - 43683130
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||||||||| |||||  || |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  43683239 actgaggtgcaaaggaacacacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 43683140  T
Q  254 tctcaaaatc 263  Q
    ||||||||||    
T  43683139 tctcaaaatc 43683130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 53977457 - 53977562
Alignment:
Q  163 cagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaat 262  Q
    |||| ||||||| ||||||| || ||||||||||| ||||||||  | ||  | |||||||||||| | |||  ||| || ||||||||||||||||||     
T  53977457 cagaagaatgcacacaaagatttaaagaagaaggattgcaaggctttatttctgattcaacaaagtcttgatgaaggtaactttgaaagaatctcaaaac 53977556  T
Q  263 ccacaa 268  Q
    ||||||    
T  53977557 ccacaa 53977562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 44147806 - 44147884
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  44147806 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 44147884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 382
Target Start/End: Original strand, 37659322 - 37659553
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  37659322 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 37659421  T
Q  252 aatctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaa 348  Q
    ||||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | |    
T  37659422 aatctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctga 37659519  T
Q  349 gaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||| || |||||| |||||||||||||||||||    
T  37659520 gaaggaaatttgaattgatgcaaatggaagatga 37659553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 7103436 - 7103325
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  7103436 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 7103337  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  7103336 aatctcaaaatc 7103325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 16794764 - 16794875
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  16794764 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 16794863  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  16794864 aatctcaaaatc 16794875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 389
Target Start/End: Original strand, 30047949 - 30048151
Alignment:
Q  187 aagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttgg 286  Q
    ||||||||||| ||||| ||| | ||||||||||||||| |||| |||  |||||||||||| | ||| || |   | ||||  || ||||| | |||||    
T  30047949 aagaagaaggattgcaaagcagtgttcttcattcaacaaggtgttgatggaggaaattttgataaaatttctacggctacaagatcaaaggaag-tttgg 30048047  T
Q  287 atattct-gaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagca 385  Q
    ||||||| || | || | ||||||| ||||  |||||||||||||||||||||| |||||||||||| || ||| |  |||||||||||||||| |||||    
T  30048048 atattctagagaaatatcatgaaggagatgagaaggtgaaggagataaagcttcggtctttaagaaggaaatttaagttgatgcaaatggaagaggagca 30048147  T
Q  386 aaag 389  Q
    ||||    
T  30048148 aaag 30048151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 382
Target Start/End: Original strand, 12019384 - 12019615
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| | || ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  12019384 ctactgaggtgcaaaggaacgcacataaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 12019483  T
Q  252 aatctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaa 348  Q
    ||||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | |    
T  12019484 aatctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctga 12019581  T
Q  349 gaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||| || |||||| |||||||||||||||||||    
T  12019582 gaaggaaatttgaattgatgcaaatggaagatga 12019615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 30695893 - 30696002
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||| ||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  30695893 actgaagtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 30695992  T
Q  254 tctcaaaatc 263  Q
    ||||||||||    
T  30695993 tctcaaaatc 30696002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 10275134 - 10275241
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||||||||| ||||| ||| |||| || || |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  10275134 actgaggtgcaaaggaacgcacacaaggagttgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 10275233  T
Q  254 tctcaaaa 261  Q
    ||||||||    
T  10275234 tctcaaaa 10275241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 40371295 - 40371198
Alignment:
Q  166 aggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatc 263  Q
    ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||||||||||||    
T  40371295 aggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaatc 40371198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 16598282 - 16598202
Alignment:
Q  305 tgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagca 385  Q
    |||||| ||||  ||||||||| ||||||||||||| |||||| |||| || ||||||  | |||||||||||||||||||    
T  16598282 tgaaggagatgaaaaggtgaagtagataaagcttcactctttatgaaggaaatttgaatagttgcaaatggaagatgagca 16598202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 15067003 - 15066729
Alignment:
Q  18 cagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaatt 117  Q
    ||||||||||||  ||||||||| ||||||| |  ||||||| ||||| ||| || |    ||||||||| | ||||||||||| |||||| ||||||||    
T  15067003 cagtttcaatacacatcttccaattcttgaaggaagaaactgggaaagatggagtacttcgatgaagaacctgtttggggcacacgatttgttggaaatt 15066904  T
Q  118 gtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttca 217  Q
    ||||||| |   ||  |||| || | ||  ||| | || || || || ||||||||  |||||||||| |||||||||||  | |||||  | ||| | |    
T  15066903 gtgcaaatcaggtacaatgatttagatg-caatgcaaccgaagttcaaaggaatgcgcacaaagaattaaagaagaaggatcgtaaggctttgttcctga 15066805  T
Q  218 ttcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttggatattct 293  Q
    ||||||||||| | |||  |||||| ||||||||||| |  ||||||||||  || ||||| |||| |||||||||    
T  15066804 ttcaacaaagtcttgatgaaggaaactttgaaagaattttgaaatccacaagatcaaaggaagcttgggatattct 15066729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 7103283 - 7103205
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  7103283 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 7103205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 16794917 - 16794995
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  16794917 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 16794995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 40371156 - 40371078
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| |||||   ||| |||||||||||  | ||||| || |||||| |||||||||||||||||||    
T  40371156 atgaaggtgatgataaagtgaaattgattaagcttcagtcactgagaaggaaatttgaactgatgcaaatggaagatga 40371078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 21416666 - 21416559
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||||||||| ||||| ||| |||| |||||||||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  21416666 actgaggtgcaaaggaacgcacacaaggaatttaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 21416567  T
Q  254 tctcaaaa 261  Q
    ||||||||    
T  21416566 tctcaaaa 21416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 263
Target Start/End: Complemental strand, 8319657 - 8319455
Alignment:
Q  61 gaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgagg 160  Q
    ||||| ||| ||||| | ||||||||  | ||||| |||||||||||||| ||||||||||| || | |   | ||| || | ||  ||| | ||||| |    
T  8319657 gaaagatggagtgcagtgatgaagaatctgtttggagcacaagatttgcttgaaattgtgcagaatggtgtaggtgaattagctgcgaatgccactgaag 8319558  T
Q  161 tgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaa 260  Q
    |||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||||||||||    
T  8319557 tgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaa 8319458  T
Q  261 atc 263  Q
    |||    
T  8319457 atc 8319455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 27571780 - 27571683
Alignment:
Q  166 aggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatc 263  Q
    ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||||||||||||    
T  27571780 aggaacgcacacaaggaattgaagaagaaagattgcaaggctctattcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaatc 27571683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 14531458 - 14531265
Alignment:
Q  61 gaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgagg 160  Q
    ||||| ||| ||||| | ||||||||  | ||||| ||||||||| || ||||||||||||| || | |  | |||| || | ||  ||| | |||||||    
T  14531458 gaaagatggagtgcagtgatgaagaatctgtttggagcacaagatctgttggaaattgtgcagaatggtgttaatgaattagctgcgaatgccactgagg 14531359  T
Q  161 tgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaat 254  Q
    |||| ||||| ||| |||| ||||| |||||||| || |||||| |  | ||||| |||||||||||| | |||  ||||||||||||||||||    
T  14531358 tgcaaaggaacgcacacaaggaattgaagaagaatgattgcaagactatgttcttgattcaacaaagtcttgatgaaggaaattttgaaagaat 14531265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 17881539 - 17881430
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||| ||||| ||||| ||| | || ||||| | |||||| || ||||||||  | ||||| |||||||||||| | |||  |||||| ||||||||||    
T  17881539 actgatgtgcaaaggaacgcacataaggaattgatgaagaaagattgcaaggctttgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 17881440  T
Q  254 tctcaaaatc 263  Q
    ||||||||||    
T  17881439 tctcaaaatc 17881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 8319413 - 8319335
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  8319413 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 8319335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 27571641 - 27571563
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| |||||   ||| |||||||| ||  | ||||| ||||||||| |||||||||||||||||||    
T  27571641 atgaaggtgatgataaagtgaaattgattaagcttcaatcactgagaaggaagtttgaactgatgcaaatggaagatga 27571563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 8051487 - 8051598
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  8051487 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 8051586  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  8051587 aatctcaaaatc 8051598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 36671146 - 36671257
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  36671146 ctactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 36671245  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  36671246 aatctcaaaatc 36671257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 261
Target Start/End: Complemental strand, 13270681 - 13270481
Alignment:
Q  61 gaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgagg 160  Q
    ||||| ||||||||| | ||||||||  | ||||| ||||||||| || |||||||||||||||| | |   ||||| || | ||  ||| | |||||||    
T  13270681 gaaagatggggtgcaatgatgaagaatctgtttggagcacaagatctgttggaaattgtgcaaaatggtgtagatgaattagctgcgaatgccactgagg 13270582  T
Q  161 tgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaa 260  Q
    |||| |||||  || |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||| |||||    
T  13270581 tgcaaaggaacacacacaaggaattgaagaagaaagattgcaaggctctgttctttattcaacaaagtcttgatgaaggaaactttgaaagaatatcaaa 13270482  T
Q  261 a 261  Q
    |    
T  13270481 a 13270481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 25268795 - 25268685
Alignment:
Q  3 catgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcacaa 102  Q
    ||||||||  |||||||||||||||||  ||||||||| ||||||| ||||||| || ||||| ||| |||   | ||||||||  | ||||||||||||    
T  25268795 catgaatggtaacaacagtttcaatactcatcttccaattcttgaaggtggaaattgggaaagatggagtgttgtgatgaagaatctgtttggggcacaa 25268696  T
Q  103 gatttgctgga 113  Q
    |||||| ||||    
T  25268695 gatttgttgga 25268685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 8051640 - 8051718
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  8051640 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 8051718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 36671299 - 36671377
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  36671299 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 36671377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 263
Target Start/End: Original strand, 27757401 - 27757603
Alignment:
Q  61 gaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgagg 160  Q
    ||||| ||| ||||| | ||||||||  | ||||| |||||||||||||| ||||||||||| || | |   ||||| || | ||  ||| | ||||| |    
T  27757401 gaaagatggagtgcagtgatgaagaatctgtttggagcacaagatttgcttgaaattgtgcagaatggtgtagatgaattagctgcgaatgccactgaag 27757500  T
Q  161 tgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaa 260  Q
    |||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||||||||||    
T  27757501 tgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaa 27757600  T
Q  261 atc 263  Q
    |||    
T  27757601 atc 27757603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 7944145 - 7944034
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| | || ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  7944145 ctactgaggtgcaaaggaacgcacaaaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 7944046  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  7944045 aatctcaaaatc 7944034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 730356 - 730440
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaa 388  Q
    ||||||| |||| ||||||||||  ||| |||||||||||||| ||||| ||||||||| ||||||| ||||| || ||||||||    
T  730356 atgaaggcgatgataaggtgaagttgattaagcttcagtctttgagaaggaagtttgaattgatgcagatggaggaagagcaaaa 730440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 7943992 - 7943914
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  7943992 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 7943914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 266
Target Start/End: Original strand, 729995 - 730024
Alignment:
Q  237 aggaaattttgaaagaatctcaaaatccac 266  Q
    ||||||||||||||||||||||||||||||    
T  729995 aggaaattttgaaagaatctcaaaatccac 730024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 48927 - 48816
Alignment:
Q  152 ctactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaag 251  Q
    ||||||||||||| ||||| ||| | || ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||    
T  48927 ctactgaggtgcaaaggaacgcacataaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaag 48828  T
Q  252 aatctcaaaatc 263  Q
    ||||||||||||    
T  48827 aatctcaaaatc 48816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 48774 - 48696
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  48774 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 48696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 263
Target Start/End: Original strand, 39794399 - 39794601
Alignment:
Q  61 gaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgagg 160  Q
    ||||| ||| ||||| | ||||||||  | ||||| |||||||||||||| ||||||||||| || | |   | ||| || | ||  ||| | ||||| |    
T  39794399 gaaagatggagtgcagtgatgaagaatctgtttggagcacaagatttgcttgaaattgtgcagaatggtgtaggtgaattagctgcgaatgccactgaag 39794498  T
Q  161 tgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaa 260  Q
    |||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||||||||||    
T  39794499 tgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaa 39794598  T
Q  261 atc 263  Q
    |||    
T  39794599 atc 39794601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 26312110 - 26312219
Alignment:
Q  154 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 253  Q
    ||||| ||||| |||||  || |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  26312110 actgaagtgcaaaggaacacacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 26312209  T
Q  254 tctcaaaatc 263  Q
    ||||||||||    
T  26312210 tctcaaaatc 26312219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 39794643 - 39794721
Alignment:
Q  304 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatga 382  Q
    |||||||||||| ||| ||||||  ||| |||||||| ||| | ||||| || |||||  |||||||||||||||||||    
T  39794643 atgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatga 39794721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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