View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_25 (Length: 385)
Name: NF16551_high_25
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_25 |
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| [»] scaffold1127 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 11975821 - 11975464
Alignment:
| Q |
13 |
gagaagaaaatcaatatgctgacatattaaaaaatatagggcttagcttctaatcacttaactgtttggcttaatgtcctcgactgtattagagctactt |
112 |
Q |
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| T |
11975821 |
gagaagaaaatcaatatgctgacatattagaaaatatagggcttagcttctaatcacttaattgtttggcttaatgtcctcgactgtattagagctactt |
11975722 |
T |
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| Q |
113 |
atgtacaaaacaagttaggtaaacctaactttaggtttgttaactattaaggagattttggtgtggtccccctccttcctaggcttgccttcttttgcct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11975721 |
atgtacaaaacaagttaggtaaacctaactttaggtttgttaactactaaggagattttggtgtggtccccctccttgctaggcttgccttcttttgcct |
11975622 |
T |
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| Q |
213 |
aaaatatataatctgaccatagaccaactccaaagcataaacgaaaaaactgcaaaatgacaaatataacaggttatataaaagaaagcgcgttacatta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11975621 |
aaaatatataatctgaccatagaccaactccaaagcataaatgaaaaaactgcaaaatgacaaatataacaggttatataaaagaaagcgcgttacatta |
11975522 |
T |
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| Q |
313 |
catgcatcgcctaaaaatattaatttattacacatgcatgatattttagtatattatt |
370 |
Q |
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| T |
11975521 |
catgcatcgcctaaaaatattaatttattacacatgcatgatattttagtatattatt |
11975464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 31112600 - 31112471
Alignment:
| Q |
60 |
ttctaatcacttaactgtttggcttaatgtcctcgactgtattagagctacttatgtacaaaacaagttaggtaaacctaactttaggtttgttaactat |
159 |
Q |
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| T |
31112600 |
ttctaatcatataacagtttagcttaatatccctgattgcattagagctagttatgtacaaaacaagttaggaatgcctaactataggtttgtaaattac |
31112501 |
T |
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| Q |
160 |
taaggagattttggtgtggtccccctcctt |
189 |
Q |
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| T |
31112500 |
ataggaggttttggtttgatccccctcctt |
31112471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 15894666 - 15894612
Alignment:
| Q |
136 |
cctaactttaggtttgttaactattaagga-gattttggtgtggtccccctcctt |
189 |
Q |
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| T |
15894666 |
cctaactttaggtttgttacctattaaggaggtttttggtttggtccccctcctt |
15894612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1127 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1127
Description:
Target: scaffold1127; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 902 - 956
Alignment:
| Q |
136 |
cctaactttaggtttgttaactattaagga-gattttggtgtggtccccctcctt |
189 |
Q |
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| T |
902 |
cctaactttaggtttgttacctattaaggaggtttttggtttggtccccctcctt |
956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 16847803 - 16847749
Alignment:
| Q |
136 |
cctaactttaggtttgttaactattaagga-gattttggtgtggtccccctcctt |
189 |
Q |
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| T |
16847803 |
cctaactttaggtttgttacctattaaggaggtttttggtttggtccccctcctt |
16847749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 12699231 - 12699284
Alignment:
| Q |
121 |
aacaagttaggtaaacctaactttaggtttgttaactattaaggagattttggt |
174 |
Q |
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| T |
12699231 |
aacaaattaggaaagcctaattttaggtttgttaacttttaaggaggttttggt |
12699284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 8224121 - 8224069
Alignment:
| Q |
138 |
taactttaggtttgttaactattaagga-gattttggtgtggtccccctcctt |
189 |
Q |
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| T |
8224121 |
taactttaggtttgttacctattaaggaggtttttggtttggtccccctcctt |
8224069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 13138832 - 13138764
Alignment:
| Q |
118 |
caaaacaagttaggtaaacctaactttaggtttgttaactattaaggagattttggtgtggtccccctcc |
187 |
Q |
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| T |
13138832 |
caaaacaagttagggatgcctaactttaggtttgttacccattaaggag-gtttggtttggcccccctcc |
13138764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 24557532 - 24557464
Alignment:
| Q |
118 |
caaaacaagttaggtaaacctaactttaggtttgttaactattaaggagattttggtgtggtccccctcc |
187 |
Q |
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| T |
24557532 |
caaaacaagttagggatgcctaactttaggtttgttacccattaaggag-gtttggtttggcccccctcc |
24557464 |
T |
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