View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_27 (Length: 379)
Name: NF16551_high_27
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 21 - 376
Target Start/End: Complemental strand, 33114394 - 33114038
Alignment:
| Q |
21 |
gtgttgtttgttgcctttggaattattgaaatctaactaaatgtgttatcaagaacagggactgcgtgacatgtaatggatggcaggccatgcggtgtac |
120 |
Q |
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| T |
33114394 |
gtgttgtttgttgcctttggaattattgaaatctaactaaatgtgttatcaagaacagggactgtgtgacatgtaatggatggcaggccatgcggtgtac |
33114295 |
T |
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| Q |
121 |
catgtgtcgaggaagtggaagagcccactatcaagtgaagaattgccacctgaagaggtgagtactctccatgtggaaaaaagtcagagtttacaggcat |
220 |
Q |
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| T |
33114294 |
catgtgtcgaggaagtggaagagtccactatcaagtgaagaattgccacctgaagaggtgagtactctccatgtggaaaaaagtcagagtttacaggcat |
33114195 |
T |
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| Q |
221 |
tattccaatgtagtttgtggtttatttagtgttattgttgaaatttttaataatgagttaat-atctcacaaacttgtaaaacagttgattccaatctca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33114194 |
tattccaatgtagtttgtggtttatttagtgttattgttgaagtttttaataatgaattaatgatctcacaaacttgtaaaacagttgattccaatctca |
33114095 |
T |
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| Q |
320 |
taaattgagattctagttgtattataatactctgcaatctttatcttttcggttcat |
376 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33114094 |
taaattgagattctagttgtattttaatactctgcaatctttatcttttcggttcat |
33114038 |
T |
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