View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_3 (Length: 788)
Name: NF16551_high_3
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_3 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 523 - 778
Target Start/End: Original strand, 9536084 - 9536339
Alignment:
| Q |
523 |
cctcagtcccacttttgcctttcctatttggacactcggttataaaacgccccagctgctttcatgcataacatattcttgaccccttcatgcattggca |
622 |
Q |
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| T |
9536084 |
cctcagtcccacttttgcctttcctatttggacactcggttataaaatgccccagctgctttcatgcataacatatccttgaccccttcatttattgaca |
9536183 |
T |
|
| Q |
623 |
tgttcccttgcttaagttccagaaattcttgctctttcttaatcttgaaagactttggaaggtacttctccattattgctttcttaaaactagcccaatt |
722 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9536184 |
tgttcccttgcttaagttccagaaattcttgctctttcttaatcttgaaagacttcggaaggtacttctccattattgctttcttaaaactagcccaatt |
9536283 |
T |
|
| Q |
723 |
gatttctacatcattgaccgttatacgacgttgagcaccttcccaccaatcctatg |
778 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
9536284 |
gatttctacatcattgaccgtcatacgacgttgagcaccttcccaccaatcttatg |
9536339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 286 - 492
Target Start/End: Original strand, 9535879 - 9536086
Alignment:
| Q |
286 |
atgtatttatattgattgttgatttgttctaaaagattaaatatttaaattctcaattcacctttgaatcatatttgatattcattgtcttagtttttta |
385 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9535879 |
atgtatttgtattgattgttgatttgttctaaaagattaaatatttaaattctcaattcacctttgaatcatatttgatattcattgtcttagtttttta |
9535978 |
T |
|
| Q |
386 |
tcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcgcaaaaaattttg-aaaacgaaaaacgctattcatcccatcctctagcg |
484 |
Q |
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| T |
9535979 |
tcatcatcaaacacagattcaatagtcatactctttttaatccatgtattcctaaaaaaaattgaaaaacgaaaaacgctattcatcccatcctctagcg |
9536078 |
T |
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| Q |
485 |
aacttcct |
492 |
Q |
| |
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|||||||| |
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| T |
9536079 |
aacttcct |
9536086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 9535711 - 9535820
Alignment:
| Q |
173 |
gttcatcgacttcaaaagaaaagaacgtggtatattgtctcttatggtgacgttaatcaatgtaaaattctgagtagaggtgttgttggaaatccttcca |
272 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9535711 |
gttcatcgacttcaaaagaaaagaatgtggtat--tgtctcttgtggtgatattaatcaatgtaaaattctgagtagaggtgttgttggaaatccttcca |
9535808 |
T |
|
| Q |
273 |
catctaacagaa |
284 |
Q |
| |
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|||||| ||||| |
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| T |
9535809 |
catctagcagaa |
9535820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 442
Target Start/End: Original strand, 27272207 - 27272356
Alignment:
| Q |
295 |
tattgattgttgatttgttctaaaagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcat |
392 |
Q |
| |
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|||||||| |||||||||| | |||||| | ||||| || |||||||||| |||||||| |||||||| |||||||| ||| |||| ||||||| | |
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| T |
27272207 |
tattgattattgatttgtttcataagattcattatttgaacctctcaattcagctttgaatattatttgattttcattgttttaattttgttatcattgt |
27272306 |
T |
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| Q |
393 |
caaacacagattcaatagtcatactctttttaatccatgttttcgcaaaa |
442 |
Q |
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| T |
27272307 |
cgcacacaaattcaatagtcatactcttgttaatccacgcttttgcaaaa |
27272356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 9535627 - 9535681
Alignment:
| Q |
83 |
aaatttacctaaa-tgttataagagtgcttattaaccacaagaagaaaatagtat |
136 |
Q |
| |
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| T |
9535627 |
aaatttacctaaaatgttataagagtgctttgtaaccacaagaagaaaatagtat |
9535681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 339 - 515
Target Start/End: Original strand, 16192154 - 16192330
Alignment:
| Q |
339 |
caattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcg |
437 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||| || |||| |||||||||| | |||| |||| |||||||||||||| |||||||| ||||| | |
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| T |
16192154 |
caattcacatttgaatcttatttgatattcattgtcctaattttgttatcatcattacgcacaaattcgatagtcatactcttgttaatccacgtttttg |
16192253 |
T |
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| Q |
438 |
caaaaaattttgaa-aacgaaaaacgctattcatcccatcctctagcgaacttcctatagtttgtcatatagactaaca |
515 |
Q |
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||||| ||||||| ||||||||| |||||| | || ||||||||| ||||| |||||||||||||||||||||| |
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| T |
16192254 |
caaaaccttttgaagaacgaaaaatgctattgacacccccctctagcgcacttc--ttagtttgtcatatagactaaca |
16192330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 295 - 469
Target Start/End: Original strand, 17349939 - 17350117
Alignment:
| Q |
295 |
tattgattgttgatttgttctaaaagattaaatatttaaa-ttctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcat |
392 |
Q |
| |
|
|||||||||||||||| | || |||| | | ||||| || ||||||||||||||||||||| || || || |||||||||||| |||| ||||||||| |
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| T |
17349939 |
tattgattgttgattttctttataagagtcattatttgaacttctcaattcacctttgaatcttagtttattttcattgtcttaattttgttatcatcac |
17350038 |
T |
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| Q |
393 |
caaacacagattcaatagtcatactcttt-ttaatccatgttttcgcaaaaaattttg-aaaacgaaaaacgctattca |
469 |
Q |
| |
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|| |||| |||||||||||||||||||| |||||||| | ||| |||||| ||||| ||||||||||||| |||||| |
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| T |
17350039 |
taagcacaaattcaatagtcatactctttgttaatccacgcttttgcaaaatcttttgaaaaacgaaaaacgttattca |
17350117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 318 - 453
Target Start/End: Complemental strand, 6241 - 6104
Alignment:
| Q |
318 |
aagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcata |
415 |
Q |
| |
|
|||||| | ||||||||| |||||||| | ||||||||| |||||| |||||||||||||| |||| |||||||||||| |||| |||||||||||||| |
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| T |
6241 |
aagattcattatttaaatctctcaatttagctttgaatcttatttgttattcattgtcttaattttgttatcatcatcatgcacaaattcaatagtcata |
6142 |
T |
|
| Q |
416 |
ctctttttaatccatgttttcgcaaaaaattttgaaaa |
453 |
Q |
| |
|
| || | |||||| |||||||||||| ||||||||| |
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| T |
6141 |
gttttgtgaatccacgttttcgcaaaaccttttgaaaa |
6104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 469
Target Start/End: Complemental strand, 23142442 - 23142308
Alignment:
| Q |
338 |
tcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttc |
436 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||| |||| |||||||| || |||| | |||||||| | |||| |
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| T |
23142442 |
tcaattcaactttgaatcttatttgatattcattgtcttaattttgttatcatcatcacgcacaaattcaataatcgtactttagttaatccacgctttc |
23142343 |
T |
|
| Q |
437 |
gcaaaaaattttgaaaa--cgaaaaacgctattca |
469 |
Q |
| |
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||||||| ||| |||| |||||||||||||||| |
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| T |
23142342 |
gcaaaaaccttttaaaaaccgaaaaacgctattca |
23142308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 3462372 - 3462253
Alignment:
| Q |
336 |
tctcaattcacctttgaatcatatttgatattcattgtctt-agttttttatcatcatcaaacacagattcaa-tagtcatactctttttaatccatgtt |
433 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||| | ||| |||||||||||| |||| || ||| ||||||||||||| |||||| | | | |
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|
| T |
3462372 |
tctcaattcacctttaaatcttatttgatattcattgtcttgattttgttatcatcatcacgcacaaatgcaattagtcatactcttgttaatctacgct |
3462273 |
T |
|
| Q |
434 |
ttcgcaaaaaattttgaaaa |
453 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
3462272 |
ttcgcaaaaccttttgaaaa |
3462253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 515
Target Start/End: Original strand, 17279071 - 17279294
Alignment:
| Q |
286 |
atgtatttatattgattgttgatttgttctaaaagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-t |
383 |
Q |
| |
|
|||||||| |||||||||||||| || || | |||||| | ||||| || |||||||||| |||||||||||||| |||||||||| |||| | |
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| T |
17279071 |
atgtatttgtattgattgttgatatgctccataagattcattatttgaacctctcaattcagctttgaatcatattaa-----cattgtcttaattttgt |
17279165 |
T |
|
| Q |
384 |
tatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcgcaaaaaattttgaaaacg-aaaaacgctattcatcccatcctctag |
482 |
Q |
| |
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|||||||| || ||||| |||||||||||||||| || | ||||| | ||||| |||| |||| |||| | ||||||| |||||| ||| | ||||| |
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|
| T |
17279166 |
tatcatcaacacacacaaattcaatagtcatacttttggttatccaagctttcgtaaaaccttttaaaaatgaaaaaacgttattcacccc--catctag |
17279263 |
T |
|
| Q |
483 |
cgaacttcctatagtttgtcatatagactaaca |
515 |
Q |
| |
|
|| |||||| |||||||||||||| ||||||| |
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|
| T |
17279264 |
cgcacttcc--tagtttgtcatatacactaaca |
17279294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 19166578 - 19166619
Alignment:
| Q |
161 |
agactaatccatgttcatcgacttcaaaagaaaagaacgtgg |
202 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||||| |
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|
| T |
19166578 |
agactcatccatgtccatcaacttcaaaagaaaagaacgtgg |
19166619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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