View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_30 (Length: 361)
Name: NF16551_high_30
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 5554052 - 5554376
Alignment:
| Q |
20 |
ctaagattatggaaaagacacattgaaatgtttgtcaatatttgtttacttttcctattctggtttctcacgtttaattcatgaattttatttatcaaat |
119 |
Q |
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| T |
5554052 |
ctaagattatggaaaagacacattgaaatgtttgtcaatatttgtttacttttcctattctggtctctcacgtttaattcatgaattttatttatcaaat |
5554151 |
T |
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| Q |
120 |
aataagccaaaacgtgcaaaaacatgttttaattaatgataatctgactgtaaactaataaacaaccacagacaaaacagtggtaaccaacaccacaaat |
219 |
Q |
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| T |
5554152 |
aataagccaaaatgtgcaaaaacatgttttaattaatgataatctgactgtaaactaataaacaaccacagacaaaacagtggtaaccaacaccacaaat |
5554251 |
T |
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| Q |
220 |
aaatatcgacataaacataataagacacattccacatcccactcaaataaggggtattagagtgatttgaaggcttatccagaaaccatttttaaaagga |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5554252 |
aaatatcgacataaac---ctaagacacattccacatcccactcaaataaggggtattagagtgatttgaaggcttatccagaaaccatctttaaaagga |
5554348 |
T |
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| Q |
320 |
gaacttaattttattcaccaagtattat |
347 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
5554349 |
gaacttaattttattcaccaaatattat |
5554376 |
T |
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