View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16551_high_34 (Length: 346)
Name: NF16551_high_34
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_34 |
 | |
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| [»] scaffold0054 (1 HSPs) |
| | |
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| [»] scaffold0337 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 21691699 - 21692028
Alignment:
| Q |
1 |
agacatgaggaaatccaagataaattgggaccccaactctttacaatcatctgtaagacctcaaagaaataatatttnnnnnnn--tggggggattatgc |
98 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
21691699 |
agacctgaggaaatccaagataaattgggaccccaactctttacaatcatctgtaagacctcaaagaaataatatttaaaaaaaaatggggggactatgc |
21691798 |
T |
|
| Q |
99 |
ctaaactcaaggaaacaaatactatatagaaaactgcctcgttaaaaaccttaacaagaaaattcaataggataaaacttggtgagggnnnnnnngagtg |
198 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
21691799 |
ctaaactcaaggaaacaaatactata--gaaaactccctcattaaaaaccttaacaaaaaaattcaataggataaaacttggtgagggaaagaaagagtg |
21691896 |
T |
|
| Q |
199 |
cagcatatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatgtcccctagtttc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
21691897 |
cagcatatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaagttgaaatattatgatgtcccctaatttc |
21691996 |
T |
|
| Q |
299 |
aattgtgcaattaatgcagattacgaatatat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
21691997 |
aattgtgcaattaatgcagattacgaatatat |
21692028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 107 - 311
Target Start/End: Complemental strand, 20149584 - 20149383
Alignment:
| Q |
107 |
aaggaaacaaatactatatagaaaactgcctcgttaaaaaccttaacaagaaaattcaataggataaaacttggtgagggnnnnnnngagtgcagcatat |
206 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||||| ||| |
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|
| T |
20149584 |
aaggaaacaaacactata--gaaaactgtttcgttgaaaaccttaacaagaaaatccaatgcgataaaatttggtgaag-taaaaaagagtgcagcgtat |
20149488 |
T |
|
| Q |
207 |
acacataaaattaaatttaacagctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatgtcccctagtttcaattgtgc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| |
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| T |
20149487 |
acacataaaattaaatttaacagctagataaacataatttatatttttaaataaaaattaaaagttgaaatattgtgatgtcccctagtttcaatcgtgc |
20149388 |
T |
|
| Q |
307 |
aatta |
311 |
Q |
| |
|
||||| |
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|
| T |
20149387 |
aatta |
20149383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 107 - 323
Target Start/End: Original strand, 22183248 - 22183457
Alignment:
| Q |
107 |
aaggaaacaaatactatatagaaaactgcctcgttaaaaaccttaacaagaaaattcaataggataaaacttggtgagggnnnnnnngagtgcagcatat |
206 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||||| ||| |
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|
| T |
22183248 |
aaggaaacaaacactata--gaaaactgtttcgttgaaaaccttaacaagaaaatccaatgcgataaaatttggtgaag-taaaaaagagtgcagcgtat |
22183344 |
T |
|
| Q |
207 |
acacataaaattaaatttaacagctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatgtcccctagtttcaattgtgc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
22183345 |
acacataaaattaaatttaacagctagataaacataatttatatttttaaataaaaattaaaagttgaaatattgtgatgtcccctagtttca----tgc |
22183440 |
T |
|
| Q |
307 |
aattaatgcagattacg |
323 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
22183441 |
aattaatgcagattacg |
22183457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 311
Target Start/End: Original strand, 21728643 - 21728828
Alignment:
| Q |
124 |
atagaaaactgcctcgttaaaaaccttaacaagaaaattcaataggataaaacttggtgagggnnnnnnngagtgcagcatatacacataaaattaaatt |
223 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||||| |||| |||||||||||| ||| || |||||||| | ||||||| ||||||||| |
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|
| T |
21728643 |
atagaaaactgcctcgttaaaa-cctgatcaagaaaacccaattggataaaacttgatgaaggaaaaaa-gagtgcagtgtgtacacattcaattaaatt |
21728740 |
T |
|
| Q |
224 |
taacagctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatgtcccctagtttcaattgtgcaatta |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
21728741 |
tactagctagataaacataatttatatttttaaataaagaataaaacttgaaatattgtgatgtcccctagtttcaattgtgcaatta |
21728828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 130 - 311
Target Start/End: Original strand, 21847754 - 21847932
Alignment:
| Q |
130 |
aactgcctcgttaaaaaccttaacaagaaaattcaataggataaaacttggtgagggnnnnnnngagtgcagcatatacacataaaattaaatttaacag |
229 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | | ||||||||||| ||| || |||||||||||| ||||||||||||||||||| || |
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|
| T |
21847754 |
aactgcctcattaaaaaccttaacaagaaaatctattgagataaaacttgatgaaggaaaaaa-gagtgcagcata--cacataaaattaaatttaaaag |
21847850 |
T |
|
| Q |
230 |
ctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatgtcccctagtttcaattgtgcaatta |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | |||||| |||||| | |||| |||||| ||||| |||||||||||| |
|
|
| T |
21847851 |
ctagataaacataatttatatttttaagtaaagaaaaaaagtagaaataatgtgatatcccctggtttcgattgtgcaatta |
21847932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 107 - 310
Target Start/End: Original strand, 67650 - 67850
Alignment:
| Q |
107 |
aaggaaacaaatactatatagaaaactgcctcgttaaaaaccttaacaagaaaattcaataggataaaacttggtgagggnnnnnnngagtgcagcatat |
206 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
67650 |
aaggaaacaaatactata--gaaaactgtctcgttaaaaaccttaacaagaaaatccaataggataaaacttggtgaaggaaaaaa-gagtgcagcatat |
67746 |
T |
|
| Q |
207 |
acacataaaattaaatttaacagctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatgtcccctagtttcaattgtgc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
67747 |
acacataaaattaaatttaacagctagataaacataatttatatttttaaataaaagttaaaagttgaaatattgtgatgttccctagtttcaatcgtgc |
67846 |
T |
|
| Q |
307 |
aatt |
310 |
Q |
| |
|
|||| |
|
|
| T |
67847 |
aatt |
67850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 323
Target Start/End: Complemental strand, 18976 - 18747
Alignment:
| Q |
87 |
gggggattatgcctaaactcaaggaaacaaatactatatagaaaactgcctcgttaaaaaccttaacaagaaaattcaataggataaaacttggtgaggg |
186 |
Q |
| |
|
|||||| |||| | |||| ||||||||||||||||||| | |||| ||||||||||||||||||||| |||| ||||| | |||||||||| ||| || |
|
|
| T |
18976 |
gggggactatgtcaaaacccaaggaaacaaatactataaa--aaaccgcctcgttaaaaaccttaacaggaaatctcaatggaataaaacttgatgaagg |
18879 |
T |
|
| Q |
187 |
nnnnnnngagtgcagcatatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatg |
286 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
18878 |
aaaaaa-gagtgcagcttatacacataaaattaaatttgacagctagataaacataatttatatttttaaatacaaaataaaagttgaaatattgtgatg |
18780 |
T |
|
| Q |
287 |
tcccctagtttcaattgtgcaattaatgcagattacg |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
18779 |
tcccctagtttca----tgcaattaatgcagattacg |
18747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 106 - 327
Target Start/End: Complemental strand, 6250 - 6032
Alignment:
| Q |
106 |
caaggaaacaaatactatatagaaaactgcctcgttaaaaaccttaacaagaaaat-tcaataggataaaacttggtgagggnnnnnnngagtgcagcat |
204 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| ||||||||| | |||| | ||||| | |||||||||| ||| || ||||||||| | |
|
|
| T |
6250 |
caaggaaacaaatactata--gaaaaccgcctcgttacaaaccttaaga-gaaattctcaatggaataaaacttgatgaaggaaaaaa-gagtgcagctt |
6155 |
T |
|
| Q |
205 |
atacacataaaattaaatttaacagctagataaacataatttatatttttaaataaactataaaagttgaaatattatgatgtcccctagtttcaattgt |
304 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6154 |
atacacataaaataaaatttgacagctagataaacattatttatatttttaaataaacaataaaagttgaaatattgtgatgtcccctagtttcaattgt |
6055 |
T |
|
| Q |
305 |
gcaattaatgcagattacgaata |
327 |
Q |
| |
|
||||||||| |||| |||||||| |
|
|
| T |
6054 |
gcaattaatacagactacgaata |
6032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6359 - 6291
Alignment:
| Q |
1 |
agacatgaggaaatccaagataaattgggaccccaactctttacaatcatctgtaagacctcaaagaaa |
69 |
Q |
| |
|
||||||||||||||| || ||| |||||| | ||||| |||||||||| | |||||||||||||||| |
|
|
| T |
6359 |
agacatgaggaaatcttagctaagttgggatcttaactcattacaatcatttataagacctcaaagaaa |
6291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 8509664 - 8509621
Alignment:
| Q |
133 |
tgcctcgttaaaaaccttaacaagaaaattcaataggataaaac |
176 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
8509664 |
tgcctcgttaaaaaccttaccaagaaaatccaatgggataaaac |
8509621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 15493118 - 15493165
Alignment:
| Q |
131 |
actgcctcgttaaaaaccttaacaagaaaattcaataggataaaactt |
178 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
15493118 |
actgtctcgttaaaaaccttaataagaaaatccaaaaggataaaactt |
15493165 |
T |
|
Back To:
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