View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_46 (Length: 276)
Name: NF16551_high_46
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_46 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 1029423 - 1029148
Alignment:
| Q |
1 |
ccgataattacgcacaaacataacataatgcatatcaaaattgcatatcttaataatcattaatcaacagaggtttcatattccacatgtcataaccgca |
100 |
Q |
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| T |
1029423 |
ccgataattacgcacaaacataacataatgcatatcaaaattgcatatcttaataatcattaattaacagaggtttcatattccacatgtcataaccgca |
1029324 |
T |
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| Q |
101 |
atgtaaagaagctataacaaagaagaaagaaaataaaactaagcaatcaaaataaacaggacatgcatcttatgtttcaagcaccattccaacccatctt |
200 |
Q |
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| T |
1029323 |
atgtaaagaagctataacaaagaagaaagaaaataaaactaagcaatcaaaataaacaggacatgcatcttatgtttcaagcaccattccaacccatctt |
1029224 |
T |
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| Q |
201 |
ttcacgtaatatatatttcagacaacctgaaataattttacctccaaaccaaaagccattcttctcgaaagaaaat |
276 |
Q |
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| T |
1029223 |
ttcacgtaatatatatttcggacaacctgaaataattttacctccaaaccaaaagccattcttctcgaaagaaaat |
1029148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 1012096 - 1011844
Alignment:
| Q |
22 |
aacataatgcatatcaaaattgcatatcttaataatcattaatcaacagaggtttcatattccacatgtcataaccgcaatgtaaagaagctataacaaa |
121 |
Q |
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| T |
1012096 |
aacataatgcatatcaaaattgcatatcttaataatcattaataaacagaggtttcatattccacatgtcataacctcaatggaaagaagttataacata |
1011997 |
T |
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| Q |
122 |
gaagaaagaaaataaaactaagcaatcaaaataaacaggacatgcatcttatgtttcaagcaccattccaacccatcttttcacgtaatatatatttcag |
221 |
Q |
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| T |
1011996 |
gaagaaagaaaataaaactaagcaatcaaaataaacaggacatgcatcttatgtttcaagcaccattccaacccatcttttcacgtaatatatatttcag |
1011897 |
T |
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| Q |
222 |
acaacctgaaataattttacctccaaaccaaaagccattcttctcgaaagaaa |
274 |
Q |
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| T |
1011896 |
ataacatgaaataattttacctccaaaccaaaagccattcttctcgaaagaaa |
1011844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 991652 - 991486
Alignment:
| Q |
34 |
atcaaaattgcatatcttaataatcattaatcaacagaggtttcatattccacatgtcataaccgcaatg------taaagaagctataacaaagaagaa |
127 |
Q |
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| T |
991652 |
atcaaaactacatatcttaatcatcatcaattaacagaggtttcatattctacatgtcggaacctcaatggaagaaaaaaaaaactataacatagaag-- |
991555 |
T |
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| Q |
128 |
agaaaataaaactaagcaatcaaaataaacaggacatg----catcttatgtttcaagcaccattccaac |
193 |
Q |
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| T |
991554 |
-gaaaataaaactacgcaattaaaataaacatgacatgtatatatcttatatttcaagcatcattccaac |
991486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 991475 - 991401
Alignment:
| Q |
181 |
gcaccattccaacccatcttttcacgtaatatatatttcagacaacctgaaataattttacctccaaaccaaaagcc |
257 |
Q |
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| T |
991475 |
gcaccattccaaaccatactttaac-taatatatatt-caaacaacctgaaataattttacttccaaaccaaaagcc |
991401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 23645755 - 23645682
Alignment:
| Q |
114 |
ataacaaagaagaaagaaaataaaactaagcaatcaaaataaacaggacatgcatcttatgtttcaagcaccat |
187 |
Q |
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| T |
23645755 |
ataacaaagaagaaggaaaataatactcagcaattaaaagaaacaggacatgcatcttatatttcaagcaccat |
23645682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 23812819 - 23812892
Alignment:
| Q |
114 |
ataacaaagaagaaagaaaataaaactaagcaatcaaaataaacaggacatgcatcttatgtttcaagcaccat |
187 |
Q |
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| T |
23812819 |
ataacaaagaagaaggaaaataatactcagcaattaaaagaaacaggacatgcatcttatatttcaagcaccat |
23812892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 23779860 - 23779896
Alignment:
| Q |
155 |
aacaggacatgcatcttatgtttcaagcaccattcca |
191 |
Q |
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| T |
23779860 |
aacaggacatggatcttatatttcaagcaccattcca |
23779896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 23866813 - 23866849
Alignment:
| Q |
155 |
aacaggacatgcatcttatgtttcaagcaccattcca |
191 |
Q |
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| T |
23866813 |
aacaggacatggatcttatatttcaagcaccattcca |
23866849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 33038911 - 33038850
Alignment:
| Q |
127 |
aagaaaataaaactaagcaatcaaaataaacaggacatgcatcttatgtttcaagcaccatt |
188 |
Q |
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| T |
33038911 |
aagaaaataaaactctgcaattgatagaaacaagacatgcatcttatgttgcaagcaccatt |
33038850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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