View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16551_high_5 (Length: 674)

Name: NF16551_high_5
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16551_high_5
NF16551_high_5
[»] chr4 (8 HSPs)
chr4 (47-563)||(4741775-4742294)
chr4 (473-600)||(4750274-4750401)
chr4 (406-461)||(4747345-4747400)
chr4 (205-299)||(4753231-4753325)
chr4 (619-658)||(3675998-3676037)
chr4 (1-33)||(4741089-4741121)
chr4 (629-658)||(4750401-4750430)
chr4 (1-34)||(4752936-4752969)
[»] chr1 (1 HSPs)
chr1 (353-417)||(4407870-4407935)
[»] chr2 (1 HSPs)
chr2 (370-417)||(35954862-35954910)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 47 - 563
Target Start/End: Original strand, 4741775 - 4742294
Alignment:
Q  47 aaggataggaaaatcaattaccaaggaatttagcatcgtgccatgattttaaaagcaaaaatggacatttcaattcacataatttcgtggcgcaaaataa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||| |||| ||| ||||  ||||||||||||||||||||| ||||||  | | ||    
T  4741775 aaggataggaaaatcaattaccaaggaatttagcatcgtgcctcaattctaaa-gcataaatcaacatttcaattcacataattttgtggcgggagagaa 4741873  T
Q  147 ttgattcatgaaacaatttgggggagtgtcaaaacaagatttgaattctgaaacaaaccgtgacacgatattgctacattgtggcacaatgttacattga 246  Q
     ||  ||||||||| |||||  |||||||||||| || |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  4741874 gtgcatcatgaaacgatttgaaggagtgtcaaaataaaatttgaattctgaaactaatcgtgacacaatattgctacattgtggcacaatgttacattga 4741973  T
Q  247 tgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatcatgacactatctataaatgtatctttaggttgattcggttctgtttt 346  Q
    || ||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||| |||||| ||| | |||||| |||||    
T  4741974 tgtttcctaacataaaagacaagtgaagtatcacgccacgatctatgagtatcatgacacaatttataaatgtaactttagattggtacggttcggtttt 4742073  T
Q  347 aaaactgaaccagactaagtcaaatactttttcgatttggtttggttaaatttttggtttcgtcgattttgcttaaaccacatacacccttaactagagg 446  Q
     ||| | ||| | || | ||| ||||| ||||| ||||||||  ||| ||||||| |||||||| |||||||||||||||  ||||||| |||   ||||    
T  4742074 gaaattaaactaaacaaggtctaatacgttttccatttggttcagttgaattttttgtttcgtcaattttgcttaaaccatttacacccctaataggagg 4742173  T
Q  447 agtcat-----catgaatgtcaannnnnnnnaaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgtt 541  Q
    ||| ||     ||||||||||||        |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| | | ||||||    
T  4742174 agttatcataacatgaatgtcaa-tttttttaaagagaagcaaaaattattatcatataaaaaatgctaacattgtagccataagtgccataacaatgtt 4742272  T
Q  542 ttatttctcaaaattgtgttta 563  Q
    ||||||||||||||||||||||    
T  4742273 ttatttctcaaaattgtgttta 4742294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 473 - 600
Target Start/End: Original strand, 4750274 - 4750401
Alignment:
Q  473 aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgttttatttctcaaaattgtgtttaattaccaca 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  4750274 aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgtaacaatgttttatttctcaaaattgtgtttaattaccaca 4750373  T
Q  573 atacttatacctgtactcttgatagtgg 600  Q
    |||||| |||||||||||||||||||||    
T  4750374 atacttttacctgtactcttgatagtgg 4750401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 406 - 461
Target Start/End: Original strand, 4747345 - 4747400
Alignment:
Q  406 tcgtcgattttgcttaaaccacatacacccttaactagaggagtcatcatgaatgt 461  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4747345 tcgtcgattttgcttaaaccacatacacccttaactggaggagtcatcatgaatgt 4747400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 4753231 - 4753325
Alignment:
Q  205 cgtgacacgatattgctacattgtggcacaatgttacattgatgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatc 299  Q
    ||||||||||| || ||||||| |||||| || |||||||||||| || |||||  |||||||||||||| ||| ||| |||| |||||||||||    
T  4753231 cgtgacacgatttttctacattatggcacgattttacattgatgcctcgtgacacgtaagacaagtgaaggatcacgctacgacctatgagcatc 4753325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 619 - 658
Target Start/End: Original strand, 3675998 - 3676037
Alignment:
Q  619 ccatgaggaagaaggaagtcaaagagaaaaatagagtaac 658  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  3675998 ccatgaggaggaaggaagtcaaagagaaaaatagagtaac 3676037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4741089 - 4741121
Alignment:
Q  1 aatataagagaataatttattctttaatgcatg 33  Q
    |||||||||||||||||||||||||||||||||    
T  4741089 aatataagagaataatttattctttaatgcatg 4741121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 658
Target Start/End: Original strand, 4750401 - 4750430
Alignment:
Q  629 gaaggaagtcaaagagaaaaatagagtaac 658  Q
    ||||||||||||||||||||||||||||||    
T  4750401 gaaggaagtcaaagagaaaaatagagtaac 4750430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4752936 - 4752969
Alignment:
Q  1 aatataagagaataatttattctttaatgcatgc 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  4752936 aatataacagaataatttattctttaatgcatgc 4752969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 4407870 - 4407935
Alignment:
Q  353 gaaccagactaagtcaaatactttttcgatttggtttg-gttaaatttttggtttcgtcgattttg 417  Q
    ||||||||| | ||| ||||||||||||||||||| ||  ||||| |||||||||||||| |||||    
T  4407870 gaaccagacaatgtcgaatactttttcgatttggtctgatttaaacttttggtttcgtcggttttg 4407935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 35954862 - 35954910
Alignment:
Q  370 atactttttcgatttggtttggtt-aaatttttggtttcgtcgattttg 417  Q
    |||||||||||||||| || |||| |||||||||||| |||||||||||    
T  35954862 atactttttcgatttgattcggtttaaatttttggttacgtcgattttg 35954910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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