View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_56 (Length: 250)
Name: NF16551_high_56
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29197995 - 29198097
Alignment:
| Q |
1 |
catgtatggctctatttataatggagtgcaataagggctataagggtcttgtttttcaattcttaggaggtataccacataaatattataaagtagaata |
100 |
Q |
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| T |
29197995 |
catgtctggctctatttataatggagtgcaataagggctataagggtcttgtttttcaattcataggaggtataccac----atattataaagtagaata |
29198090 |
T |
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| Q |
101 |
tgataat |
107 |
Q |
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||||||| |
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| T |
29198091 |
tgataat |
29198097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 29198191 - 29198233
Alignment:
| Q |
197 |
cgtagccgacttctgttgtcggattatggagaatcttattcat |
239 |
Q |
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| T |
29198191 |
cgtagccgacttctgttgtcggattatggagaatcttattcat |
29198233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29202476 - 29202512
Alignment:
| Q |
1 |
catgtatggctctatttataatggagtgcaataaggg |
37 |
Q |
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| T |
29202476 |
catgtatggctctatttataatggagtgtgataaggg |
29202512 |
T |
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