View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_57 (Length: 250)
Name: NF16551_high_57
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_57 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 4597060 - 4596813
Alignment:
| Q |
5 |
gagagaaatgaatgaagattcagattatataaaatcaacctctatatata--gaataacatgcccaaaataaaccatgtttgtgcacataagaataatta |
102 |
Q |
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| T |
4597060 |
gagaaaaaagaatgaagattcagattatataaaatcaacctctatatatatagaataacatgcccaaaataaaccatgtttgtgcacataagaataatta |
4596961 |
T |
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| Q |
103 |
tacacattttctaatagaggaaacaaccaagagataagcatcaataatatgaacctattcaaaattaagctcaagtagaaatgttgaatatattagctct |
202 |
Q |
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| T |
4596960 |
tacacattttctaatagaggaaacaaccaagagataagcatcaataatatgaacctattcaaaattaagctcaagtagaaatgtttaatatattagctct |
4596861 |
T |
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| Q |
203 |
ttcccctgattattaataaaccgaaatataacgaaaaacttgtagaca |
250 |
Q |
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| T |
4596860 |
ttcccctgattattaataaaccgaaatataaagaaaaacttgtagaca |
4596813 |
T |
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