View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_58 (Length: 246)
Name: NF16551_high_58
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 7081308 - 7081084
Alignment:
| Q |
6 |
aatggaatggatggagaatgctattctaccattcatgtgactccggaagatggttatagctatgcaagctttgaatgtgtggggtccataagcgacaatg |
105 |
Q |
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| T |
7081308 |
aatggaatggatggagaatgctattctaccattcatgtgactccggaagatggttatagctatgcaagctttgaatgtgtggggtccataagcgacaatg |
7081209 |
T |
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| Q |
106 |
atgacaacattgttcatatgttgaggaaggttgttcagattttccgaccagggacaatgtcggtgtcaataacgacatgtagtgagtataacaatgaggt |
205 |
Q |
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| T |
7081208 |
atgacaacattgttcatatgttgaggaaggttgttcagattttccgaccagggacaatgtcggtgtcgataacgacatgtagtgagtataacaatgaggt |
7081109 |
T |
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| Q |
206 |
ttggagaaaggttactggtgcattg |
230 |
Q |
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| T |
7081108 |
ttggagaaaggttactggtgcattg |
7081084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 49020509 - 49020594
Alignment:
| Q |
6 |
aatggaatggatggagaatgctattctaccattcatgtgactccggaagatggttatagctatgcaagctttgaatgtgtggggtc |
91 |
Q |
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| T |
49020509 |
aatggaatggatgatgattggtattccaccattcatgttacaccagaagatggtttcagctatgcaagctttgaatgtgttgggtc |
49020594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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