View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16551_high_6 (Length: 662)

Name: NF16551_high_6
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16551_high_6
NF16551_high_6
[»] chr3 (1 HSPs)
chr3 (18-654)||(46215482-46216118)


Alignment Details
Target: chr3 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 46215482 - 46216118
Alignment:
Q  18 attcattcttcctatgttttgtaccgggatgtgaatttacttcagttgtagaaactaatttagaatcagcaagcccatgtgtctggcatctaatatcggt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46215482 attcattcttcctatgttttgtaccgggatgtgaatttacttcaattgtagaaactaatttagaatcagcaagcccacgtgtctggcatctaatatcggt 46215581  T
Q  118 agacttcaaggtgcagccatggttgtccataacatgatttgatgccacagagctagatgattgaaagttatgtatgctcatagcatctgcagaacctgga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215582 agacttcaaggtgcagccatggttgtccataacatgatttgatgccacagagctagatgattgaaagttatgtatgctcatagcatctgcagaacctgga 46215681  T
Q  218 tctttgccaatactagaggtttgggaggaaaaagaatatagaggcggctcggacctgtctttagattctaattgatcatgttcagaaccaccgggagtag 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215682 tctttgccaatactagaggtttgggaggaaaaagaatatagaggcggctcagacctgtctttagattctaattgatcatgttcagaaccaccgggagtag 46215781  T
Q  318 tgctcataatattggcatctttgccgttgatgaatgagaggttccttgcctttgaagaatgaattacattttcagatgatgctggtcctggatgtggcat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215782 tgctcataatattggcatctttgccgttgatgaatgagaggttccttgcctttgaagaatgaattacattttcagatgatgctggtcctggatgtggcat 46215881  T
Q  418 attcttcccaacagggtttggaagagtgtcatcattcgaagattctttagccttggtatcttgtatatgcaaaggaggtgtggtactgaattgaaagcga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215882 attcttcccaacagggtttggaagagtgtcatcattcgaagattctttagccttggtatcttgtatatgcaaaggaggtgtggtactgaattgaaagcga 46215981  T
Q  518 aatgacaatccagagtcggtcttttcaccagctgattcatcagaatgggatggataagtgtcatctttaatccctctcgagtcaagagctttatcccaga 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215982 aatgacaatccagagtcggtcttttcaccagctgattcatcagaatgggatggataagtgtcatctttaatccctctcgagtcaagagctttatcccaga 46216081  T
Q  618 atccagaaggctcaattttcgcccccttccctatgct 654  Q
    |||||||||||||||||||||||||||||||||||||    
T  46216082 atccagaaggctcaattttcgcccccttccctatgct 46216118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University