View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_60 (Length: 242)
Name: NF16551_high_60
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 5524082 - 5523904
Alignment:
| Q |
14 |
aatatcaatattagggaaagcttgaacggctaacagaaaatcacattcaagccataaatcatcctctag----aatgaccaattttaatggaataaatat |
109 |
Q |
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| T |
5524082 |
aatatcaatattagggaaagcttgaacggctaacagaaaatcacattcaagccataaatcatcctctagctagaatgaccaattttaatggaataaatat |
5523983 |
T |
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| Q |
110 |
ggcagctcttatttcagagaaagcaccaataaaaacctcaaaatgactttttcttaactcatttttgcttataattaga |
188 |
Q |
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| T |
5523982 |
ggcagctcttatttcagagaaagcaccaataaaaacctcaaaatgactttttcttaactcatttttgcttataattaga |
5523904 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 37953799 - 37953835
Alignment:
| Q |
189 |
ggtgtcatttagaatggacctttacatgtattggtcc |
225 |
Q |
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| T |
37953799 |
ggtgccatttagaatggacctttacatgtattggtcc |
37953835 |
T |
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