View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_67 (Length: 229)
Name: NF16551_high_67
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 7081311 - 7081524
Alignment:
| Q |
1 |
ttgaatagccacaaggatcaaatgcaaaatcacaaatgaatgcttctttgttgatttcatttataccagtaagttctgtcatttgttttccggaagagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7081311 |
ttgaatagccacaaggatcaaatgcaaaatcacaaatgaatgcttctttgttgatttcatttataccagtaagttctgtcatttgatttccggaagagtt |
7081410 |
T |
|
| Q |
101 |
gccggatttctcctcgtcgggtcgcctgaagaattttccggcaagaataggatcaagctctgtcatgcaaatctccattgtgtattgttcataaggtatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7081411 |
gccggatttctcctcgtcgggtcgcctgaagaattttccggcaagaataggatcaagctctgtcatgcaaatctccattgtgtattgttcataaggtatg |
7081510 |
T |
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| Q |
201 |
tgatgatgagggtt |
214 |
Q |
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|||||||||||||| |
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| T |
7081511 |
tgatgatgagggtt |
7081524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 49020506 - 49020329
Alignment:
| Q |
1 |
ttgaatagccacaaggatcaaatgcaaaatcacaaatgaatgcttctttgttgatttcatttataccagtaagttctgtcatttgttttccggaagagtt |
100 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||| | | ||| |||||||| || |||||||| || ||||| | |||||||| |||| |
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| T |
49020506 |
ttgaatatccacaaggatcaaatgcaaagtcacaaatgaatgcatttgggtttatttcattgattccagtaagctccgtcatctcttttccggctgagtc |
49020407 |
T |
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| Q |
101 |
gccggatttctcctcgtcgggtcgcctgaagaattttccggcaagaataggatcaagctctgtcatgcaaatctccat |
178 |
Q |
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|| | ||| | || ||||| ||| ||||||||| | || |||||||| || |||||||||||||| |||||||| |
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| T |
49020406 |
accagtttttccatctccgggtggccggaagaatttccgagctagaatagggtctagctctgtcatgcatatctccat |
49020329 |
T |
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