View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_high_9 (Length: 515)
Name: NF16551_high_9
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 413
Target Start/End: Original strand, 6031379 - 6031802
Alignment:
| Q |
3 |
tattattcttacaatggaaactatgcaaaccaaatctcactttccatatcattgtccaaaatgaaaaccattcacctatcatcatcaatttctttcaaac |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6031379 |
tattcttcttacaatggaaactatgcaaaccaaatctcactttccatatcattgtccaaaatgaaaacccttcacctatcatcatcaatttctttcaaac |
6031478 |
T |
|
| Q |
103 |
cacnnnnnnnctcttctaggttcactatagtccttaactagtaagtagttaatttcctctaaaaaattaatatccgtgtaaaaaggtgtttttaggaagc |
202 |
Q |
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| T |
6031479 |
cactttttttctcttctaggttcactatagtccttaactagtaagtagttcatttcctctaaaaaattaatatccgtgtaaaaaggtgtttttaggaagc |
6031578 |
T |
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| Q |
203 |
tacttcactataacccataagaacatagctatatacctcttgttcnnnnnnngttgtgaaacaagaaactagggtttttc-------------atcttca |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
6031579 |
tacttcactataacccataagaacatagctatatacctcttgttctttttttgttgtgaaacaagaaactagggtttttctccatttgagtcaatcttca |
6031678 |
T |
|
| Q |
290 |
aatgtttccttcaacttattgctctttaggtccttacccttgttataatcctaattcatcttcttcttcacactcataccctccttttacttttcttacc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6031679 |
aatgtttccttcaacttattgctctttaggtccttacccttgttataatcctaattcatcttcttcttcacactcataccctccttttacttttcttacc |
6031778 |
T |
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| Q |
390 |
cctgatcaaaatgcttcttctaat |
413 |
Q |
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| T |
6031779 |
cctgatcaaaatgcttcttctaat |
6031802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 500
Target Start/End: Original strand, 6031848 - 6031898
Alignment:
| Q |
450 |
tttcttcatgatcctactatttctgttccctacacacaaacaactcataat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6031848 |
tttcttcatgatcctactatttctgttccctacacacaaacaactcataat |
6031898 |
T |
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