View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_11 (Length: 555)
Name: NF16551_low_11
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 71 - 540
Target Start/End: Complemental strand, 39677508 - 39677058
Alignment:
| Q |
71 |
gaaagtcagttttaaaactaaatatgttcgggtaagataagattgagatgannnnnnnacttaacttcaaaacaactttcaactaaaattcaaaaccgaa |
170 |
Q |
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| T |
39677508 |
gaaagtcagttttaaaactaaatatgttcggataaaatgagattgagatgatttttttacttaacttcaaaacaactttcaactaaaattcaaaaccgaa |
39677409 |
T |
|
| Q |
171 |
aacaataggtttcaaaagttatgtttctattttaattctaacatgtcgtcgccaaactccaccacctatgaatcgtcgactagtacaccaaccatcattc |
270 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677408 |
aacaataggtttcaaaagttatgtttctgttttaattctaacatgtcatcgccaaactccaccacctatgaatcgtcgactagtacaccaaccatcattc |
39677309 |
T |
|
| Q |
271 |
taaccaccatagatcatcactcttactaccacaagttatcactccgaccattgctagccgccacttcaaccaccaccaaccaccgtttatgaccacctct |
370 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
39677308 |
taaccaccacagatcatcactcttactaccacaagttatcactccgaccattgctagccgccacttcaaccaccaccaaccacag-ttatgaccacctct |
39677210 |
T |
|
| Q |
371 |
gatcaccactttatccaccttcgatctctaaactgaccaccaccagctaccattataaacacagttctgaccaccaatatgagcatcgtcggtcatcact |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
39677209 |
gatcaccactttatccaccttcgatctctaaactgaccaccaccagc------------------tctaaccaccaatatgagcatcgtcggtcatcact |
39677128 |
T |
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| Q |
471 |
ctgtccacctttgatcactactttgactatcattgactgctactataactatcatcaatcaccactttga |
540 |
Q |
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| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677127 |
ccgtctacctttgatcactattttgactatcattgactgctactataactatcatcaatcaccactttga |
39677058 |
T |
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