View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_13 (Length: 505)
Name: NF16551_low_13
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_13 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 28 - 492
Target Start/End: Original strand, 10236985 - 10237450
Alignment:
| Q |
28 |
tgttagaagagtccattaaattatatatattctctttcaaccttttgtaatgttaatgctattgttaatcttattgaaatcctagccgtagttattttta |
127 |
Q |
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| T |
10236985 |
tgttagaagagtccattaaattatatatattctcttgcaac-ttttgtaatgttaatgctattgttaatcttattgaaatcctagccgtagttattttta |
10237083 |
T |
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| Q |
128 |
taactgattgtctatattgttatcaggagtaactcgtaacatggataaaactgaacattaggtctcatcaatatataatac--ccatgttaagagtaatt |
225 |
Q |
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| T |
10237084 |
taactgattgtctatattgttataaggagtaactcgtaacatggataaaactgaacattaggtctcatcaatatataatacacccatgttaagagtaatt |
10237183 |
T |
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| Q |
226 |
agaaaaacaaactcacaatttataagtcataaatatgcaaaaataccaaattacttaggatttaaagcataacttcacagctattttcttcagcaaagat |
325 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
10237184 |
agaaaaacaaactcacaatttctaagtcataaatatgcaaaaatacctaattacttaggatttaaagcataacttcacaaccattttcttcagcaaagat |
10237283 |
T |
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| Q |
326 |
gacggtttagcaggttgaggttgatcgtctgtttgattattcatttctggcggaatatatggctgtgaagaactccctggatcatcatgatggttgtttg |
425 |
Q |
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| T |
10237284 |
gacggtttagcaggttgaggttgatcgtctgtttgattattggtttctggcggaatatatggctgtgaagaactccctggatcatcatgatggttgtttg |
10237383 |
T |
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| Q |
426 |
aacgcattggaccatgagaatcaaatgatccacttgggatgcttctatcttcaaacatgtttctagt |
492 |
Q |
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| T |
10237384 |
aacgcattggaccgtgagaatcaaatgatccacttgggatgcttctatcttcaaacatgtttctagt |
10237450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 240 - 342
Target Start/End: Complemental strand, 10247251 - 10247149
Alignment:
| Q |
240 |
acaatttataagtcataaatatgcaaaaataccaaattacttaggatttaaagcataacttcacagctattttcttcagcaaagatgacggtttagcagg |
339 |
Q |
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| T |
10247251 |
acaatttataagttaaaaatatgcaatagtacaaaattacttaggatgctaagcataacttctcagcaattttcttcataaaagaagatcgttgagcagg |
10247152 |
T |
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| Q |
340 |
ttg |
342 |
Q |
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||| |
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| T |
10247151 |
ttg |
10247149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 26403520 - 26403579
Alignment:
| Q |
51 |
tatatattctctttcaaccttttgtaatgttaatgctattgttaatcttattgaaatcctag |
112 |
Q |
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| T |
26403520 |
tatatattctcttataactttttgtaatgtt-atgctattgttattc-tattgaaatcctag |
26403579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 14567 - 14467
Alignment:
| Q |
48 |
ttatatatattctctttcaaccttttgtaatgttaatgctattgttaatcttattgaaatcctagccgtagttatttttataactgattgtctatattgt |
147 |
Q |
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| T |
14567 |
ttatatatattctcttataaccttttgtagtattaa-gctattgttaataatattgaaaccctagccgtcattatttttatctttgattttctatattgt |
14469 |
T |
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| Q |
148 |
ta |
149 |
Q |
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|| |
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| T |
14468 |
ta |
14467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 28063049 - 28062983
Alignment:
| Q |
48 |
ttatatatattctctttcaaccttttgtaatgttaatgctattgttaatcttattgaaatcctagccgt |
116 |
Q |
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| T |
28063049 |
ttatatatattctctagtaaccttttgtaatgttaa-gctattgttaatcata-tgaaaccctagccgt |
28062983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 8986981 - 8987063
Alignment:
| Q |
35 |
agagtccattaaattatat---atattctctttcaaccttttgtaatgttaatgctattgttaatcttattgaaatcctagccgt |
116 |
Q |
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| T |
8986981 |
agagtccattaaattttattatatattctcttataaccttttgtaatgttaa-gctattgttagtc-taatgaaatcgtagccgt |
8987063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 8985647 - 8985710
Alignment:
| Q |
51 |
tatatattctctttcaaccttttgtaatgttaatgctattgttaatcttattgaaatcctagccgt |
116 |
Q |
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| T |
8985647 |
tatatattctcttataaccttttgtaatgttaa-gctattgttagtc-taatgaaatcgtagccgt |
8985710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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