View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_15 (Length: 497)
Name: NF16551_low_15
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_15 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 57 - 479
Target Start/End: Complemental strand, 54918037 - 54917616
Alignment:
| Q |
57 |
acgatttttgaatactagatgggatgaacaatggggtgatctgtctctgatgcatgctaataagtgcgttccttgtatctatcggttcctctattagatt |
156 |
Q |
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| T |
54918037 |
acgatttttgaatactaggtgggatgaacaatggggtgatttgtctctgatacatgctaataagtgtgttccc-gtatctatcggttcctgtattagatt |
54917939 |
T |
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| Q |
157 |
ttgctttaggagtggcaataacgaggaatgttgctagctatatgagtcatagcccaactcccattgtgtttgttcagtttaactactttcgatggagaac |
256 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54917938 |
ttgctttaggagtggcaacaatgaggaatgttgctagctatatgagtcatagccaaactcccattgtgtttgttcagtttaactactttcaatggagaac |
54917839 |
T |
|
| Q |
257 |
atccctccgattagagactcgagccttgataatggggtagtagcaaatattaatgagaaaatcactggcaacatcactctatataattgaatattttact |
356 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54917838 |
atccatccgattagagactcgagccttgataatggggtagtagcaaatattaatgagaaaatcactggcaacatcactatatataattgaatattttact |
54917739 |
T |
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| Q |
357 |
aactttttatattgttgatgttgtagttgagttttcatttagcttatgtatttctaccattctgtgaaatgtcattgtcatggaagaacagtaggatgaa |
456 |
Q |
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| T |
54917738 |
aactttttatattgttaatgttgaagttgagttttcatttagtttatgtatttctaccattctgtgaaatgtcattgtcatggaagaacagtaggatgaa |
54917639 |
T |
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| Q |
457 |
atgacagaagacaatggtaaaaa |
479 |
Q |
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| T |
54917638 |
atgacagaaggcaatggtaaaaa |
54917616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 54918121 - 54918074
Alignment:
| Q |
11 |
agattatactagggttgttttgactaggtagcaagcacaaacttccac |
58 |
Q |
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| T |
54918121 |
agattatactagggttgttttgactaggtagcaagcacaaacttccac |
54918074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 15167485 - 15167432
Alignment:
| Q |
179 |
gaggaatgttgctagctatatgagtcatagcccaactcccattgtgtttgttca |
232 |
Q |
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| T |
15167485 |
gaggaatgttgccagctatattagtcatagcccaactccaaatgtgtttgttca |
15167432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 15181568 - 15181515
Alignment:
| Q |
179 |
gaggaatgttgctagctatatgagtcatagcccaactcccattgtgtttgttca |
232 |
Q |
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| T |
15181568 |
gaggaatgttgccagctatattagtcatagcccaactccaaatgtgtttgttca |
15181515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 15476268 - 15476321
Alignment:
| Q |
179 |
gaggaatgttgctagctatatgagtcatagcccaactcccattgtgtttgttca |
232 |
Q |
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| T |
15476268 |
gaggaatgttgccagctatattagtcatagcccaactccaaatgtgtttgttca |
15476321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 23253982 - 23254035
Alignment:
| Q |
179 |
gaggaatgttgctagctatatgagtcatagcccaactcccattgtgtttgttca |
232 |
Q |
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| T |
23253982 |
gaggaatgttgccagctatattagtcatagcccaactccaaatgtgtttgttca |
23254035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 8578 - 8529
Alignment:
| Q |
183 |
aatgttgctagctatatgagtcatagcccaactcccattgtgtttgttca |
232 |
Q |
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| T |
8578 |
aatgttgccagctatatcagtcatagcccaactcctaatgtgtttgttca |
8529 |
T |
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