View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_16 (Length: 485)
Name: NF16551_low_16
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 183248 - 182869
Alignment:
| Q |
15 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
114 |
Q |
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| T |
183248 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
183149 |
T |
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| Q |
115 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
214 |
Q |
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| T |
183148 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
183049 |
T |
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| Q |
215 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaa |
314 |
Q |
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| T |
183048 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaa |
182949 |
T |
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| Q |
315 |
atcaattaaatgatggtccattatatacctttcacatgagatcctgtttattactgttacaaaaatactcctatttaatc |
394 |
Q |
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| T |
182948 |
atcaattaaataatggcccattatataactttcacatgagatcctgtttattactgttacaaaaatactcctatttaatc |
182869 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 15962607 - 15962650
Alignment:
| Q |
136 |
caaattagtctctataatacaatgatttatggactaatttatcc |
179 |
Q |
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| T |
15962607 |
caaattagtctctctaatacaatgagttaaggactaatttatcc |
15962650 |
T |
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