View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_17 (Length: 458)
Name: NF16551_low_17
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_17 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 6144491 - 6144930
Alignment:
| Q |
12 |
atgaagcatgtacctatataactcagtttcaacatgacgaaatcgagataacattgttaaattagagcatgcatttcgaaatgnnnnnnntccacaccac |
111 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
6144491 |
atgaagcatgtacctatataactc-gtttcaacatgacgaaatcgagataacattgttaaattagagcatgcatttcgaaacgaaaaaaatccacaccac |
6144589 |
T |
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| Q |
112 |
gttatgtcgacagaaagcatgcctcatcttttattcttatcatttgttcacttatttcacttatgtacaaaaagcggtactggcactagtgaatgatcgt |
211 |
Q |
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| T |
6144590 |
attatgtc---agaaagcatgcctcatcttttattcttatcatttgttcacttatttcacttatgttcaaaaagtggtactggcactagtgaatgatcgt |
6144686 |
T |
|
| Q |
212 |
gtccttagacaatgatgaatttacaatcatcctaa----nnnnnnnnnatagagaataccactttcgcggcgactaaaactaaagggtat-gcattgtgg |
306 |
Q |
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| T |
6144687 |
gtccttagccaatgatgaatttacaatcatcctaattttcttttttttttagagaataccactttcgcggcgactaaaactaaagtgtatggccttgtgg |
6144786 |
T |
|
| Q |
307 |
aggtgtttaaggattgt--atcccaatggacaaaccttgg-----atcaaattagcgcgagcgccgataatactatatcttagagctcataaaggtactg |
399 |
Q |
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| T |
6144787 |
aggtttctaaggatcgttaatcccaatggaaaaaccttggatcccatcccattagcgcgggcgccggtaatactatatcttagagctcataaaggtactg |
6144886 |
T |
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| Q |
400 |
agaccattttagtaaaacacgttaaatagcatgaactttttgat |
443 |
Q |
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| T |
6144887 |
agaccattttagtaaagcgcgttaaatagcatgaactttttgat |
6144930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 12 - 439
Target Start/End: Original strand, 10972 - 11405
Alignment:
| Q |
12 |
atgaagcatgtacctatataactcagtttcaacatgacgaaatcgagataacattgttaaattagagcatgcatttcgaaatgnnnnnnn-tccacacca |
110 |
Q |
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||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||| ||| | |
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| T |
10972 |
atgaagcctgtatctatataactc-gtttcaacatgacgaaatcgagataacattgttaaattagggcatgcacttcgaaacgaaaaaaaatccgcacta |
11070 |
T |
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| Q |
111 |
cgttatgtcgacagaaagcatgcctcatcttttattcttatcatttgttcacttatttcacttatgtacaaaaagcggtactggcactagtgaatgatcg |
210 |
Q |
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| T |
11071 |
cgttccgtc---agaaagcaagccccatcttctattcttatcatttgttcacttatttcacttactttcaaaaagcggtactggcactagtcaatcatcg |
11167 |
T |
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| Q |
211 |
tgtccttagacaatgatgaatttacaatcatcctaannnnnnnnnatagagaataccactttcgcggcgactaaaactaaagggtat-gcattgtggagg |
309 |
Q |
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| T |
11168 |
tgcctttagccaatgatggatttacaatca-ccgcggtttgtttttcggagaataccactttcgcggcgactaaaactaaagcgtatggccttgtggagg |
11266 |
T |
|
| Q |
310 |
tgtttaaggattgt--atcccaatgg-acaaaccttgg-----atcaaattagcgcgagcgccgataatactatatcttagagctcataaaggtactgag |
401 |
Q |
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| T |
11267 |
tttctaaggatcgttaatcccaatggaaaaaaccttggatcccatcccattagcgcgggcgccggtaatactatatcttagagctcataaaggtgctggg |
11366 |
T |
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| Q |
402 |
accattttagtaaaacacgtt-aaatagcatgaactttt |
439 |
Q |
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| T |
11367 |
agcattttagtaaagcgcgttcaaatagcatgagctttt |
11405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 28780109 - 28780147
Alignment:
| Q |
259 |
gagaataccactttcgcggcgactaaaactaaagggtat |
297 |
Q |
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| T |
28780109 |
gagaataccactttcgaggcgactaaaactaaagtgtat |
28780147 |
T |
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