View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_21 (Length: 420)
Name: NF16551_low_21
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 42548093 - 42548475
Alignment:
| Q |
17 |
cagtatcattgtgttaattcacatatcacaatagcatatttgagttctcttccttttattctcatttatcgttggtgtgtgtg--gatagtatctagttc |
114 |
Q |
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| T |
42548093 |
cagtatcattgtgttaattcacatatcacaatagcatagttgagttctcttccttttattctcatttatcgttggtgtgtgtgtggatagtatctaattc |
42548192 |
T |
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| Q |
115 |
taattaattaaacttagatgtgttttgttatctgttttgtttagattaaattgcatttagtggagtgaattgatgacttatagattagatgatgaagaag |
214 |
Q |
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| T |
42548193 |
taattaattaaacttagatgtgtt------------ttgtttagattaaattgcatttagtggagtgaattgatgacttatagattagacgatgaagaag |
42548280 |
T |
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| Q |
215 |
gaagactcaaccaccctgttcatcagtaaactcattttcttctccttcttacagtttcgtacctctttctcagtctcatattcttcaactttcccatatg |
314 |
Q |
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| T |
42548281 |
gaagattcaaccaccctgttcatcagtaaactcattttcttctccttcttacagtttctcacctctttctcagtctcatattcttcaactttcccatatg |
42548380 |
T |
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| Q |
315 |
aagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagcacagaactccacttca |
409 |
Q |
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| T |
42548381 |
aagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagcacagaactccacttca |
42548475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 33015795 - 33015886
Alignment:
| Q |
314 |
gaagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagcacagaactccac |
405 |
Q |
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| T |
33015795 |
gaagcccttcccacaagatcaggttaccttccagtaagtcacacctccaattcctccattttctatacattctatgaagcacaaaactccac |
33015886 |
T |
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