View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_25 (Length: 404)
Name: NF16551_low_25
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 2646321 - 2646691
Alignment:
| Q |
16 |
atgaacacacaaagactaacctcaagataataaagtaacttgaactattatagatagagaagctgaaagagggagagattgatgaagaaatgtgacaata |
115 |
Q |
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| T |
2646321 |
atgaacacacaaagactaacctcaagataataaagtaacttgaactattatagatagagaagctgaaagagggagagattgatgaagaaatgtgacaata |
2646420 |
T |
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| Q |
116 |
ggcatggtttatatactagaagacaccacataaaaaagaggataaatggagggaaaagagaatattgtagtactttttagtgctgtttaagtgacaacct |
215 |
Q |
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| T |
2646421 |
ggcatggtttatatactagaagacaccacataaaaaagaggataaatggagggaaaagagaatattgtagtactttttagtgttgtttaagtgacaacct |
2646520 |
T |
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| Q |
216 |
tgataaatggaatcaataaaatttaaaggagagaaaaagagataaaggaaattcgtgcttcaattccaaagagaggttactttgaattttgaacatttac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2646521 |
tgataaatggaatcaataaaatttaaaggagagaaaaagagataaaggaaattcgtgcttcaattccaaagagaggttactttgaattttgaacatttac |
2646620 |
T |
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| Q |
316 |
tttggcagtgggctacaacttcattttgttaaaatttattggtatgataatggatgcaaagtgcatatagg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2646621 |
tttggcagtgggctacaacttcattttgttaaaatttattggtatgataatggacgcaaagtgcatatagg |
2646691 |
T |
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