View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_26 (Length: 397)
Name: NF16551_low_26
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 27329014 - 27329389
Alignment:
| Q |
17 |
actagtagtgttcattttaaggtacaccatgaaaccnnnnnnnnnattctttaaaagtgctctaacttcatgtttgtaagacctttattaaccaggaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27329014 |
actagtagtgttcattttaaggtacaccatgaaacctttttttttattctttaaaagtgctctaacttcatgtttgcaagacctttattaaccaggaaca |
27329113 |
T |
|
| Q |
117 |
ccagaatagattaaccaaaagaatggcccataattgcgtgcaaattttatctcatcccattattatatattttttggttgcatctctatctcctaaatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27329114 |
ccagaatagattaaccaaaagaatggcccataattgcgtgcaaattttatctcatcccattattatatattttttggttgcatctctatctcctaaatat |
27329213 |
T |
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| Q |
217 |
caaaaaatcgcagagaaatgtgccaacattaattgttttcatgatcatttgtagagatgtgaatgcagccacaattgcagtgcagtagtttgcacaactg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27329214 |
caaaaaatcgcagagaaatgtgccaacattaattgttttcatgatcagttgtagagatgtaaatgcagccacaattgcagtgcagtagtttgcacaactg |
27329313 |
T |
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| Q |
317 |
cagttgtatagatttattgttttttgacttaattgcagtttttgtcctctgtatttatctttttgcaaaagtggtc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27329314 |
cagttgtatagatttattgttttttgacttaattgcagtttttgtcctctgtatttatctttttgcaaaattggtc |
27329389 |
T |
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