View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_29 (Length: 382)
Name: NF16551_low_29
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 37554773 - 37555142
Alignment:
| Q |
1 |
tagagaaggtctcaatatggcacattgagtcattcacttggtaagttaaattcactacatgcaattatatagtgtcaagaaacaacttaactggtaaaat |
100 |
Q |
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| T |
37554773 |
tagagaaggtctcaat--ggcacattgagtcattcacttggtaagttaaattcactacatgcaattatatagtgtcaagaaacaacttaactggtaaaat |
37554870 |
T |
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| Q |
101 |
ttcaggcagttttaccaaattaaaatatttgatcgaggttgttggatttgaatgataacagttttcaacctccattgcccaagtttcatgacagtgttga |
200 |
Q |
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| T |
37554871 |
ttcaggcagttttaccaaattaaaatatttgatcgtggttgttggatttgaatgataacagttttcaacctccattgcccaagtttcatgacagtgttga |
37554970 |
T |
|
| Q |
201 |
agttatcattgaaggtaacctacttttggataattaaacccggatgagtcatgcctccattgccatcaaatcctcaagcgagtaactccaatggattcaa |
300 |
Q |
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| T |
37554971 |
agttatcattgaaggtaacctacttttggataattaaacccggatgagtcatgcttccattgccatcaaatcctcaagcgagtaactccaatggattcaa |
37555070 |
T |
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| Q |
301 |
aacaatagctatattggttggagtggcaatatttgaatatgtaactgctataagtatctgtctcttcctatg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37555071 |
aacaatagctatattggttggagtggcaatatttgaatatgtaactgctataagtatttgtctcttcctatg |
37555142 |
T |
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