View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_32 (Length: 375)
Name: NF16551_low_32
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 1029744 - 1029533
Alignment:
| Q |
15 |
actagaaagggccaataagtatatccaatgtgaagagatgttggaagctaataaagtcatttatgggactcgagacaaaaaaggaatagggatgaagtaa |
114 |
Q |
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| T |
1029744 |
actagaaagggccaataagtatatccaatgtgaagagatgttggaagctaataaagtcatttatgggactcgagacaaaaaaggaatagggatgaagtaa |
1029645 |
T |
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| Q |
115 |
tcaaatgaaatatgttgaaattttgtgggttgtaaaactttacatactcctacactgaagaaaaagtgggagccaaagaaatgacaaataaatcaagaat |
214 |
Q |
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| T |
1029644 |
tcaaatgaaatatgttgaaattttgtgggttgtaaaactttacatactcctacactgaagaaaaagtgggagccaaagaaatgacaaataaatcaagaat |
1029545 |
T |
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| Q |
215 |
tttcacctcaat |
226 |
Q |
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|||||||||||| |
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| T |
1029544 |
tttcacctcaat |
1029533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 99 - 372
Target Start/End: Complemental strand, 1012434 - 1012159
Alignment:
| Q |
99 |
aatagggatgaagtaatcaaatgaaatatgttgaaattttgtgggttgtaaaactttacatactcctacactgaagaaaaagtgggagccaaagaaatga |
198 |
Q |
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| T |
1012434 |
aatagagatgtagtaatcaaatgaaatatgttgaaattttgtgggttgtaaaactttacatactcctacagtgaagaaaaaattggagccaaagaaatga |
1012335 |
T |
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| Q |
199 |
caaataaatcaagaattttcacctcaatatcatcatgatcagt--gtagtctcaaaagaacaatccttagggtgttaaataaaggtctgttacggctatt |
296 |
Q |
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| T |
1012334 |
caaataaaccaagaattttcacctgaatatcatcatgatgagttagtagtcacaaaagaacaatccttcgggtaataaataaaggtctgctacggctatt |
1012235 |
T |
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| Q |
297 |
tgagtcataacatgacagttttgttgacgaaaccacaatgcaactggaattgaggctacatcgcaaccgataatta |
372 |
Q |
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| T |
1012234 |
tgagtcataaaatgatggttttgttgacgaaaccacaatgcaactgcaattgaggctacatcataaccgacaatta |
1012159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 991920 - 991797
Alignment:
| Q |
243 |
tagtctcaaaagaacaatccttagggtgttaaataaaggtctgttacggctatttgagtcataacatgacagtttt-gttgacgaaaccacaatgcaact |
341 |
Q |
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| T |
991920 |
tagtctcaatagaacaatcattagggtgttaaatcaaggtctgctacggcgattt-agtcataacatgacggtttttgttgtcgaaaccacaatgcaact |
991822 |
T |
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| Q |
342 |
ggaattgaggctacatcgcaaccga |
366 |
Q |
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| T |
991821 |
ggaattgagactacatggcaaccga |
991797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 1029534 - 1029469
Alignment:
| Q |
308 |
atgacagttttgttgacgaaaccacaatgcaactggaattgaggctacatcgcaaccgataattac |
373 |
Q |
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| T |
1029534 |
atgacggttttgttgacgaaaccacaatgcaactggaattgaggctacatcgcaaccgacaattac |
1029469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 1029454 - 1029411
Alignment:
| Q |
332 |
caatgcaactggaattgaggctacatcgcaaccgataattacgc |
375 |
Q |
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| T |
1029454 |
caatgcaactggaattgagactacatcgcaaccgataattacgc |
1029411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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