View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_35 (Length: 359)
Name: NF16551_low_35
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 39677691 - 39678017
Alignment:
| Q |
17 |
taatactactagctatttcccgaaacctatcattttacttaatttttgtttcaaatgattcaatttatatcttagaaggataactacttaatactataca |
116 |
Q |
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| T |
39677691 |
taatactactagctatttcccgaaacctatcattttacttaatttttgtttcaaatgattcaatttatatcttagaaggataactacttaatactataca |
39677790 |
T |
|
| Q |
117 |
ctttttaaaatgaaattatatgattgactaactttctcaatgtgactttagcttataaattatttcggatgcagtcctcttgtgtcgtaatgcaggcaga |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39677791 |
ctttttaaaatgaaattatatgattgactaaatttctcaatgtgactttagcttataaattatttcggatggagtcctcttgtgtcgtaatgcaggcaga |
39677890 |
T |
|
| Q |
217 |
tgccttgatagaacaatgacggtgacatgtgagtccaccgtaaccacaggaaaaatgagtaacatttcnnnnnnnggtcatatcaagcatcaagtaaact |
316 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39677891 |
tgccttgataaaacaatgatggtgacatgtgagtccaccgtaaccacaggaaaaatgagtaacatttctttttttggtcatatcaagcatcaagtaaact |
39677990 |
T |
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| Q |
317 |
tatctcaactattataaccaccatttt |
343 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39677991 |
tatctcaactattataaccaccatttt |
39678017 |
T |
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