View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_36 (Length: 359)
Name: NF16551_low_36
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_36 |
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| [»] scaffold0134 (1 HSPs) |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 29417313 - 29417643
Alignment:
| Q |
19 |
ccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaagagttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29417313 |
ccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaagagttc |
29417412 |
T |
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| Q |
119 |
catggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgacccagatatgccggcgctattttgatattcggccaatctaatttgac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29417413 |
catggacactacctgaatctaaaagcctaaaaccagaatcatatctggcttgacctagatatgccggcgctattttgatattcggccaatctaatttgac |
29417512 |
T |
|
| Q |
219 |
cttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttcttcgtaaggatgacagccataagaaggacaaaatgtttggtgtaggaggagg |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29417513 |
cttattctcaaacctcgaaccggaaacagaatacaactcaaatgtttcttcgaaaggatgacagccataagaaggacaaaatgtttggtgtaggaggaga |
29417612 |
T |
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| Q |
319 |
gaggtattatcataataagaatgatcctttg |
349 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29417613 |
gaggtattatcataataagaatgatcctttg |
29417643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 24655061 - 24654801
Alignment:
| Q |
20 |
cagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaagagttcc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |
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| T |
24655061 |
cagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcccgttgtgtgcacaaaccatataaagagttcc |
24654962 |
T |
|
| Q |
120 |
atggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgaccc---agatatgccggcgctattttgatattcggccaatctaatttg |
216 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||| || | || |||| ||||| || ||||||||| ||||||||||||||| |
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| T |
24654961 |
atggacactacctgaacctaaaagcctaaaaccacgctcatatttgactccagccctataatatcccggctttaatttgatatttggccaatctaatttg |
24654862 |
T |
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| Q |
217 |
accttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttcttcgtaaggat |
277 |
Q |
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|||||||| ||||| ||| |||||||||||||||||||||||||||| || |||| ||||| |
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| T |
24654861 |
accttattttcaaaactcgaaccggaaacagaatacaactcaaatgtatcatcgtgaggat |
24654801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 349
Target Start/End: Original strand, 16487223 - 16487549
Alignment:
| Q |
20 |
cagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaagagttcc |
119 |
Q |
| |
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||||||| |||||||| |||||||| | ||| ||||| |||||||||||||||| |||| || |||| | || |||||||| |||| | |||||||| |
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| T |
16487223 |
cagaatctaaagggctgggaggaatgtgcttaaattccatagtagatggattccacaataaaatattcacatgggatgcacaaaacagacacagagttcc |
16487322 |
T |
|
| Q |
120 |
atggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgacccagatatgccggcgctattttgatattcggccaatctaatttgacc |
219 |
Q |
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| | || || || || |||| | |||||||||||||||| | | |||| || ||||| || ||| ||||| | | |||||||||||||||| | |
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| T |
16487323 |
aagaacgctgccagatcctaatatattaaaaccagaatcatactccgtttgatcccgatatataggatctaatttgacacttggccaatctaatttgatc |
16487422 |
T |
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| Q |
220 |
ttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttcttcgtaaggatgacagccataagaaggacaaaatgtttggtgtaggaggaggg |
319 |
Q |
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|||||||||||||| ||| | || ||||||||| ||||||||||| |||| ||| | | || | | ||||| |||||||||| ||||| || | | |
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| T |
16487423 |
ctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgt---gataataaccctcaaaaggagaaaatgtttgatgtagtagaaaag |
16487519 |
T |
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| Q |
320 |
aggtattatcataataagaatgatcctttg |
349 |
Q |
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| |||| || |||||||||||||||||||| |
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| T |
16487520 |
acgtatcatgataataagaatgatcctttg |
16487549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 24654761 - 24654714
Alignment:
| Q |
302 |
tttggtgtaggaggagggaggtattatcataataagaatgatcctttg |
349 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
24654761 |
tttggtgtaggaggagagaggtatcatcataataagaatgatcctttg |
24654714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 42835054 - 42835116
Alignment:
| Q |
20 |
cagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataa |
82 |
Q |
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| T |
42835054 |
cagaatcaaaagggctgggaggaagcagcttaaattccttattagatggattccacaatataa |
42835116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 29418120 - 29418178
Alignment:
| Q |
23 |
aatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatata |
81 |
Q |
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||||||||||| | |||||||| || ||| |||||||||| | |||||||||||||||| |
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| T |
29418120 |
aatcaaaagggttgggaggaatgagcttaaattccttagtggctggattccataatata |
29418178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 42777374 - 42777308
Alignment:
| Q |
202 |
ggccaatctaatttgaccttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttctt |
268 |
Q |
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||||||||||||||| || |||| |||||||| ||| ||||||||||| ||||||||| |||||| |
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| T |
42777374 |
ggccaatctaatttggccctatttccaaacctctcaccagaaacagaatataactcaaatctttctt |
42777308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 16972 - 17017
Alignment:
| Q |
206 |
aatctaatttgaccttattctcaaacctcaaaccggaaacagaata |
251 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
16972 |
aatctaatttgaccttattctcaaacctctcaccagaaagagaata |
17017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 48742658 - 48742687
Alignment:
| Q |
202 |
ggccaatctaatttgaccttattctcaaac |
231 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48742658 |
ggccaatctaatttgaccttattctcaaac |
48742687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 34287822 - 34287769
Alignment:
| Q |
202 |
ggccaatctaatttgaccttattctcaaacctcaaaccggaaacagaatacaac |
255 |
Q |
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||||||||||||||||||||||| ||||||||| || |||| |||||||||| |
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| T |
34287822 |
ggccaatctaatttgaccttattatcaaacctctcactagaaagagaatacaac |
34287769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 17836 - 17868
Alignment:
| Q |
202 |
ggccaatctaatttgaccttattctcaaacctc |
234 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
17836 |
ggccaatttaatttgaccttattctcaaacctc |
17868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 34232 - 34264
Alignment:
| Q |
202 |
ggccaatctaatttgaccttattctcaaacctc |
234 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
34232 |
ggccaatcaaatttgaccttattctcaaacctc |
34264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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