View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16551_low_4 (Length: 741)
Name: NF16551_low_4
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 360 - 736
Target Start/End: Complemental strand, 44127592 - 44127216
Alignment:
| Q |
360 |
cttcctccctgtcttcaaaatcctgatcaacttcattgacttgtgttgcatcaacaaattctgattcaatagagtcagaattttccccatttggtgaatc |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44127592 |
cttcctccctgtcttcaaaatcctgatcaacttcattgacttgtgttgcatcaacaaattctgattcattagagtcagaattttccccatttggtgaatc |
44127493 |
T |
|
| Q |
460 |
atttacttgccttgtagttacatctatgtgctttacatcatttagttccttctctagaacctcatcttccattcttgcaagttccatgtatctgttggac |
559 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44127492 |
atttacttgccttgtagctgcatctatgtgctctacatcattcagttccttctccataacctcattttccattcttgcaagttccatgtatctgttggac |
44127393 |
T |
|
| Q |
560 |
aagtttaccttatctttcacaccactggtgccaacttcatttgcatgcacttgaactacaggaattgcactaacgtcttcctctaaatcaaccgtctcca |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44127392 |
aagtttaccttatctttcacaccactggtgcctgcttcatttgcatgcacttgaactacaggaattgcactaacgtcttcctctaaatcagccgtctcca |
44127293 |
T |
|
| Q |
660 |
cttgctttccttttcctatgttatcagcagtttgcacatattgttttctggcttcagttttgtttttgttcatctct |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44127292 |
cttgctttccttttcctatgttatcagcagtttgcacatattgttttctggcttcagttttgtttttgttcatctct |
44127216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 44131176 - 44130822
Alignment:
| Q |
1 |
ctttcttgtaacacaagctacagcaggaaggtattcccatgcctctaagcatcaaattttcatcagctgtaattttgttgtgaattaatctccaaaaaa- |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
44131176 |
ctttcttgtaacacaagctacaacaggaaggtattaccatgcctctaagcataaaattttcatcagttggaattttgttgtgaattaatctccaaaaaaa |
44131077 |
T |
|
| Q |
100 |
cagtgattttgaagggggg-atataaatgtttcagataattttgccccaagaaacattgttaatagcagtagaacaatgagcataagccactttaagatt |
198 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44131076 |
cagtgattttgaagggggggatagaaatgttccagataattttgccccaagaaacattgttaatagcagtagaacaatgagcataagtcactttaagatt |
44130977 |
T |
|
| Q |
199 |
taaaatacatgtatccactggtgaccaaattctagtatcccttttctccctataaggaataattaccttttgaactatattcatcagattagggaatata |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44130976 |
taaaatacatgtatccactggtgaccaaattctagtatcccttttctccctataaggaataattaccttttgaactatattcatcagattagggaatata |
44130877 |
T |
|
| Q |
299 |
aattgaagctcttgaggtatggtcaatctaccatctgaaatgaagtgcttgaatt |
353 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44130876 |
aattgaagctctttaggtatggtccatctaccatctgaaatgaagtgcttgaatt |
44130822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University