View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16551_low_40 (Length: 341)

Name: NF16551_low_40
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16551_low_40
NF16551_low_40
[»] chr3 (28 HSPs)
chr3 (13-340)||(22614599-22614926)
chr3 (122-315)||(30988742-30988935)
chr3 (122-319)||(22467400-22467597)
chr3 (86-319)||(22620297-22620530)
chr3 (122-319)||(22634955-22635152)
chr3 (105-327)||(22647604-22647826)
chr3 (167-319)||(21946456-21946608)
chr3 (167-319)||(22053538-22053690)
chr3 (108-319)||(22105540-22105751)
chr3 (108-319)||(22180249-22180460)
chr3 (109-319)||(22656490-22656700)
chr3 (123-324)||(22430620-22430821)
chr3 (169-319)||(22115917-22116067)
chr3 (122-319)||(22436080-22436277)
chr3 (167-319)||(21931253-21931405)
chr3 (122-319)||(21937985-21938182)
chr3 (122-206)||(37930308-37930393)
chr3 (108-319)||(22035349-22035560)
chr3 (122-326)||(22353261-22353465)
chr3 (264-319)||(18966566-18966621)
chr3 (122-237)||(22357451-22357566)
chr3 (223-326)||(22367474-22367577)
chr3 (162-248)||(22028903-22028989)
chr3 (162-248)||(22187891-22187977)
chr3 (122-326)||(22442191-22442395)
chr3 (168-319)||(22457984-22458135)
chr3 (168-319)||(22480965-22481116)
chr3 (122-201)||(22629892-22629971)
[»] chr1 (4 HSPs)
chr1 (122-319)||(34990049-34990246)
chr1 (124-327)||(2304925-2305128)
chr1 (122-322)||(34976200-34976400)
chr1 (122-322)||(34983311-34983511)
[»] chr5 (1 HSPs)
chr5 (122-322)||(40580763-40580963)
[»] chr7 (2 HSPs)
chr7 (87-320)||(872126-872360)
chr7 (87-320)||(1233403-1233637)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 22614599 - 22614926
Alignment:
Q  13 gaacctgtgagccttcaatacttgccattaaatcattagaatttgtttctattgatagacggcggaattgtttacttaaggatgactgactgtcttcact 112  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22614599 gaacatgtgaaccttcaatacttgccattaaatcattagaatttgtttctattgatagacggcggaattgtttacttaaggatgactgactgtcttcact 22614698  T
Q  113 aatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22614699 aatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatc 22614798  T
Q  213 gaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22614799 gaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcag 22614898  T
Q  313 ctatccactgacgaagtagtatcttaga 340  Q
    ||||||||||||||||||||||||||||    
T  22614899 ctatccactgacgaagtagtatcttaga 22614926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 122 - 315
Target Start/End: Original strand, 30988742 - 30988935
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||| ||||||||| ||||||||||| ||||||  | |||| |||||||||||||||||||| |||| |||| |||||||   ||| |||||| | |    
T  30988742 gcaaaaatttaaatcctcaaatttttcaaggatcatatcgcgtattagatcatgaacacgacaacctttagctttaccatcaactctaaccgaagatact 30988841  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagcta 315  Q
    |||||||| |||||||  |||||||||| ||||||   ||| ||||| ||||| || |||||||| |||||||| ||||| |||||||||||||    
T  30988842 tgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagcta 30988935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 319
Target Start/End: Original strand, 22467400 - 22467597
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||||||||||||| | |||| |||| ||||||  || | | |||||||||||||||||||||||| ||| ||||||||||| | || |||   | |    
T  22467400 gcaaaaacttaaatcctcatatttatcaaggatcattgcatgcactagatcatgaacacgacaactttttactcttccatcaatacttattgaaactact 22467499  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    ||||||||||||||||  |||||||||  ||||||   ||| ||||| ||||| |||||| ||||||| || || ||||||||||||||||| |||||    
T  22467500 tgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtcctccccctgtcttccttcacaaacccttcagcaatcca 22467597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 319
Target Start/End: Original strand, 22620297 - 22620530
Alignment:
Q  86 acttaaggatgactgactgtcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaa 185  Q
    |||||| ||||| ||||  |||||||||||||    ||||||||||| ||||| | | |||||||  ||||||| ||||| |||||||||||| | ||||    
T  22620297 acttaaagatgaatgacaatcttcactaatatacttgcaaaaacttagatcctcacacttttcaagtatcatcatacgtattagatcatgaacgcaacaa 22620396  T
Q  186 cttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttcc 285  Q
    |||||   ||||||||| ||  | |  ||||| | |||||||||||||||||  |||||||||| ||| ||   ||| ||||||||||| || || ||||    
T  22620397 ctttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattcc 22620496  T
Q  286 ccctttcctctttcacaaacccttcagctatcca 319  Q
    ||||||| ||||| ||||||||||||||||||||    
T  22620497 ccctttcttcttttacaaacccttcagctatcca 22620530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 319
Target Start/End: Original strand, 22634955 - 22635152
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    |||||||||||||||||||||||| |||| ||||||  || | | |||||||||||| || |||||||| ||| ||||||||||| || | |||   | |    
T  22634955 gcaaaaacttaaatccttaaatttgtcaaggatcatttcatgcactagatcatgaacgcggcaactttttactcttccatcaatactagttgaaactact 22635054  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    ||||||||||||||||  |||||||||  ||||||   ||| ||||| ||||| |||||| | ||||| || |||||||| ||||||||||| |||||    
T  22635055 tgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtccttcccctgtcttctttcacgaacccttcagcaatcca 22635152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 105 - 327
Target Start/End: Original strand, 22647604 - 22647826
Alignment:
Q  105 tcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaa 204  Q
    ||||||||||||||   ||| ||||||| ||||| |   ||||||| |||||||| | |||  |||||||||||||  |||||||||  |||||||||||    
T  22647604 tcttcactaatatgcttgcagaaacttatatcctcactcttttcaaggatcatcatatgtatcagatcatgaacacagcaacttttagtttttccatcaa 22647703  T
Q  205 tattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaa 304  Q
    |  |||  ||||| | ||| |||||||||||||  |||||||| | ||||||   ||| ||||||||||| || || | ||||||||| |||||||||||    
T  22647704 ttctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaaggtataccccctttcttctttcacaaa 22647803  T
Q  305 cccttcagctatccactgacgaa 327  Q
     |||||||||| |||||| ||||    
T  22647804 tccttcagctacccactgtcgaa 22647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 21946608 - 21946456
Alignment:
Q  167 tagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgca 266  Q
    |||||||||||||||||||| |||| |||| ||||||||  |||  ||||| | ||| ||||  |||||||  |||||||||| ||||||   ||| ||     
T  21946608 tagatcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgcc 21946509  T
Q  267 acttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    |||||||| || |||||||| |||||||| |||||||||||||||||||||||    
T  21946508 acttcttccaaagtcttccctctttcctccttcacaaacccttcagctatcca 21946456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 22053690 - 22053538
Alignment:
Q  167 tagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgca 266  Q
    |||||||||||||||||| | |||| |||| ||||||||  |||  ||||| | ||| ||||  |||||||  |||||||||||||||||   ||| ||     
T  22053690 tagatcatgaacacgacatcctttagctttgccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgataaatatccttctgcc 22053591  T
Q  267 acttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    |||||||| || ||||||||| ||||||| |||||||||||||| ||||||||    
T  22053590 acttcttccaaagtcttccccttttcctccttcacaaacccttctgctatcca 22053538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 319
Target Start/End: Complemental strand, 22105751 - 22105540
Alignment:
Q  108 tcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatat 207  Q
    |||||||||||   ||||||| | ||||||| |   ||| ||| ||||||  |||||| |||||||||||||||||||| ||||  ||| ||||||||      
T  22105751 tcactaatatgcttgcaaaaattaaaatcctcattctttgcaaggatcatatcacgtattagatcatgaacacgacaacctttagttttgccatcaattc 22105652  T
Q  208 taatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccc 307  Q
    ||| ||| || | ||| ||||  |||||||  |||||||||| ||||||   ||| || ||||| || || ||||||||| ||||||| |||||||||||    
T  22105651 taagcgaggatacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcgtccaaagtcttccccttttcctccttcacaaaccc 22105552  T
Q  308 ttcagctatcca 319  Q
    ||||||||||||    
T  22105551 ttcagctatcca 22105540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 319
Target Start/End: Complemental strand, 22180460 - 22180249
Alignment:
Q  108 tcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatat 207  Q
    |||||||||||   ||||||| | ||||||| |  ||||| || ||||||  |||||| |||||||||||||||||||| |||| |||| ||||||||      
T  22180460 tcactaatatgcttgcaaaaattaaaatcctcatttttttgaaggatcatatcacgtattagatcatgaacacgacaacctttagctttgccatcaattc 22180361  T
Q  208 taatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccc 307  Q
    ||| |||||| | ||| ||||  |||||||  |||||||||| || |||    || || |||||||| | ||| || ||| ||||||| |||||||||||    
T  22180360 taagcgaagatacttgaaccaggcttctatggatcaactctgttagatatccctctgccacttcttccattgtttttcccttttcctccttcacaaaccc 22180261  T
Q  308 ttcagctatcca 319  Q
    ||||||||||||    
T  22180260 ttcagctatcca 22180249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 319
Target Start/End: Original strand, 22656490 - 22656700
Alignment:
Q  109 cactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatatt 208  Q
    ||||||||||   ||| ||||||||||||| | | ||||||| |||||||| | ||| || |||||| |||| ||||||||||  |||||| |||||  |    
T  22656490 cactaatatgcttgcagaaacttaaatcctcacacttttcaaggatcatcatatgtattaaatcatggacacaacaacttttagtttttccgtcaattct 22656589  T
Q  209 aatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccct 308  Q
    ||  || || | ||| ||||||| ||    ||||||||||| ||||||   ||| ||||||||||| || || ||||||||||| ||||||||||| |||    
T  22656590 aactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatccttctgcaacttcttccaaagttttccccctttcttctttcacaaaacct 22656689  T
Q  309 tcagctatcca 319  Q
    |||||||||||    
T  22656690 tcagctatcca 22656700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 324
Target Start/End: Original strand, 22430620 - 22430821
Alignment:
Q  123 caaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagattt 222  Q
    ||||| |||||||||| | |||||| || ||||||  || | | |||||||||||||||||||||| | ||| ||||||||||| | || |||   | ||    
T  22430620 caaaagcttaaatcctcatattttttaaggatcatttcatgcactagatcatgaacacgacaacttcttactcttccatcaatacttattgaatctactt 22430719  T
Q  223 gcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactg 322  Q
    |||||||||||||||  |||||||||  ||||||   ||| ||||| ||||  |||||| | ||| |||  |||||||||||||||||||| ||||| ||    
T  22430720 gcaccaaacttctatggatcaactctattaaatatccttctgcaacctctttcaatgtccttcccgttttttctttcacaaacccttcagcaatccattg 22430819  T
Q  323 ac 324  Q
    ||    
T  22430820 ac 22430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 22116067 - 22115917
Alignment:
Q  169 gatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaac 268  Q
    |||||||||||||||||| |||| |||| ||||||||  ||| |||||| | ||| |||| ||||||||  |||||||||| || |||    || || ||    
T  22116067 gatcatgaacacgacaacctttagctttgccatcaattctaagcgaagatacttgaaccatacttctatggatcaactctgttatatatccctctgccac 22115968  T
Q  269 ttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    ||| || |  ||||| ||||||||||| |||||||||||||||||||||||    
T  22115967 ttcatccatagtctttcccctttcctccttcacaaacccttcagctatcca 22115917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 319
Target Start/End: Original strand, 22436080 - 22436277
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||||||||||||| | |||| |||| ||||||  || | | || ||||||||||||||||||||| ||| ||||||||||| | || |||   |      
T  22436080 gcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactaaatcatgaacacgacaactttttactcttccatcaatacttattgaaactaca 22436179  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    ||||||||||||||||| | |||||||  ||||||   ||  ||||  ||||| |||||| | ||||| || |||||||| ||||||||||| |||||    
T  22436180 tgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtccttcccctctcttctttcacgaacccttcagcaatcca 22436277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 21931405 - 21931253
Alignment:
Q  167 tagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgca 266  Q
    |||||||||||||||||||| |||| |||| ||||||||  |||  ||||| | ||| || |  |||||||  |||||||||| ||||||   ||| ||     
T  21931405 tagatcatgaacacgacaacctttagctttgccatcaattctaagtgaagatacttgaacgaggcttctatggatcaactctgttaaatatccttctgcc 21931306  T
Q  267 acttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    |||||||| || ||| ||||| ||||||| || ||||||||||||||||||||    
T  21931305 acttcttccaaagtcatccccttttcctccttgacaaacccttcagctatcca 21931253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 319
Target Start/End: Complemental strand, 21938182 - 21937985
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||| | ||||||| |  |||||||| ||||||  |||||| |||||||||||||||||||| |||| |||| ||||||||  |||  || || | |    
T  21938182 gcaaaaattaaaatcctcatctttttcaaggatcatatcacgtattagatcatgaacacgacaacctttagctttgccatcaattctaagtgaggatact 21938083  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    || ||||  |||||||  |||||||||| || |||    || || |||||||| |  ||||| ||| ||||||| |||||||| ||||||||||||||    
T  21938082 tgaaccaggcttctatgtatcaactctgttagatatccctctgccacttcttccatagtctttcccttttcctccttcacaaatccttcagctatcca 21937985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 37930308 - 37930393
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaag-atcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaata 206  Q
    |||||||||||||||| ||||||| |||||| |||||  || | | |||||||||||||||||||||||| ||| |||||||||||    
T  37930308 gcaaaaacttaaatccataaatttgtcaaaggatcatttcatgcactagatcatgaacacgacaactttttactcttccatcaata 37930393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 319
Target Start/End: Complemental strand, 22035560 - 22035349
Alignment:
Q  108 tcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatat 207  Q
    |||||||||||   ||||||| | |||||||||  ||||| || ||||||  | |||| |||||||||||||||||||| |||| |||| ||||||||      
T  22035560 tcactaatatgcttgcaaaaattaaaatccttatttttttgaaggatcatatcgcgtattagatcatgaacacgacaacctttagctttgccatcaattc 22035461  T
Q  208 taatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccc 307  Q
    ||| ||| || | ||| ||||  |||||||  |||||||||  || |||    || || | |||||| | |||||| ||| ||||||| |||| ||||||    
T  22035460 taagcgaggatacttgaaccaggcttctatggatcaactctattagatatccctcagccagttcttccattgtctttcccttttcctccttcataaaccc 22035361  T
Q  308 ttcagctatcca 319  Q
    ||||||||||||    
T  22035360 ttcagctatcca 22035349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 326
Target Start/End: Original strand, 22353261 - 22353465
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||||||||||||| | |||||  || ||||||  || | | |||||| ||||||||||||||||| ||| ||||||||||| | |  |||   | |    
T  22353261 gcaaaaacttaaatcctcatattttctaaggatcatttcatgcactagatcgtgaacacgacaactttttactcttccatcaatactgactgaatctact 22353360  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 321  Q
    ||||||||||||||||  || ||||||  ||||||   ||| ||||| ||||| | |||| | ||||  |  |||||||||||||| ||||| ||||| |    
T  22353361 tgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttccattgtccttcccccgtattctttcacaaacccctcagcaatccatt 22353460  T
Q  322 gacga 326  Q
    |||||    
T  22353461 gacga 22353465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 18966566 - 18966621
Alignment:
Q  264 gcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    |||| |||||| || |||||||| |||||||| |||||||||||||||||||||||    
T  18966566 gcaatttcttccaaagtcttcccgctttcctccttcacaaacccttcagctatcca 18966621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 22357451 - 22357566
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    |||||| ||||||| ||||  |||||||| ||||||  || | | |||||||||||||||||||| ||| ||| ||||||||||| | || |||   | |    
T  22357451 gcaaaagcttaaatgcttatgtttttcaaggatcatttcatgcactagatcatgaacacgacaacgttttactcttccatcaatactgattgaatctact 22357550  T
Q  222 tgcaccaaacttctat 237  Q
    ||||||||||||||||    
T  22357551 tgcaccaaacttctat 22357566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 22367474 - 22367577
Alignment:
Q  223 gcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactg 322  Q
    ||||||||||||||   |||||||||  |||||    ||| ||||| ||||| |||||| | |||||||| |||||||||||||||||||| ||||| ||    
T  22367474 gcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttctttcacaaacccttcagcaatccattg 22367573  T
Q  323 acga 326  Q
    ||||    
T  22367574 acga 22367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 22028989 - 22028903
Alignment:
Q  162 cgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactct 248  Q
    |||| |||||||||||||||||| | |||| |||| |||||||| ||||  ||||| | ||||||||  |||||||| |||||||||    
T  22028989 cgtattagatcatgaacacgacatcctttagctttgccatcaattttaagtgaagatacttgcaccaggcttctattgatcaactct 22028903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 22187977 - 22187891
Alignment:
Q  162 cgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactct 248  Q
    |||| |||||||||||||||||| | |||| |||| |||||||| ||||  ||||| | ||||||||  |||||||| |||||||||    
T  22187977 cgtattagatcatgaacacgacatcctttagctttgccatcaattttaagtgaagatacttgcaccaggcttctattgatcaactct 22187891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 326
Target Start/End: Original strand, 22442191 - 22442395
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    |||||| ||||||| ||||  |||||||| ||||||  || | | ||||||||||||||| |||||||| ||| ||||||||||| |  | |||   | |    
T  22442191 gcaaaagcttaaatgcttatgtttttcaaggatcatttcatgcactagatcatgaacacggcaactttttactcttccatcaatactggttgaaactact 22442290  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 321  Q
    |||||||||||||||   || ||| ||  ||||||   ||| ||||| | ||| |||||| |  |||  |  |||||||||||||||||||||||||| |    
T  22442291 tgcaccaaacttctacagattaacacttttaaatatccttctgcaaccttttccaatgtcctttccccatattctttcacaaacccttcagctatccatt 22442390  T
Q  322 gacga 326  Q
    |||||    
T  22442391 gacga 22442395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 22457984 - 22458135
Alignment:
Q  168 agatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaa 267  Q
    ||||||||||||| |||||||||  || ||||||||||| |||| |||   | ||||||||||| |||| | ||||| |||| ||||||    || ||||    
T  22457984 agatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaa 22458083  T
Q  268 cttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    | ||||| ||||| ||  || | || ||||||||||| |||||||| |||||    
T  22458084 catcttccaatgtttttaccatatcatctttcacaaatccttcagccatcca 22458135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 22480965 - 22481116
Alignment:
Q  168 agatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaa 267  Q
    ||||||||||||| |||||||||  || ||||||||||| |||| |||   | ||||||||||| |||| | ||||| |||| ||||||    || ||||    
T  22480965 agatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaa 22481064  T
Q  268 cttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    | ||||| ||||| ||  || | || ||||||||||| |||||||| |||||    
T  22481065 catcttccaatgtttttaccatatcatctttcacaaatccttcagccatcca 22481116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 22629892 - 22629971
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccat 201  Q
    ||||||||||||||||| | |||| |||| ||||||  || | | ||||||||| |||||||||||||| ||| ||||||    
T  22629892 gcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactagatcatgtacacgacaactttttactcttccat 22629971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 122 - 319
Target Start/End: Complemental strand, 34990246 - 34990049
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||||||||||||| | | ||||||| |||||||| | |||  ||||||||||||| ||||||| ||  ||||||||||||  |||  || || | |    
T  34990246 gcaaaaacttaaatcctcacacttttcaaggatcatcatatgtatcagatcatgaacacaacaacttctagtttttccatcaatgctaactgaggatact 34990147  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 319  Q
    |||||||||||||||  ||||||||||| ||||||  ||||  |||||||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  34990146 tgcaccaaacttctacgaatcaactctgttaaatatctttcttcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatcca 34990049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 124 - 327
Target Start/End: Original strand, 2304925 - 2305128
Alignment:
Q  124 aaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttg 223  Q
    ||||||||||||||| | | ||||| | || ||| | |||||  ||||||||||||| ||||||||||  ||||||||||||  |||  || || | |||    
T  2304925 aaaaacttaaatcctcacacttttctaggaacattatacgtatcagatcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttg 2305024  T
Q  224 caccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactga 323  Q
    ||||||||||| |  ||||||||||||||||||   ||| ||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||     
T  2305025 caccaaacttcgacgaatcaactctgataaatatccttctgcaacttcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgt 2305124  T
Q  324 cgaa 327  Q
    ||||    
T  2305125 cgaa 2305128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 322
Target Start/End: Complemental strand, 34976400 - 34976200
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||||||||||||| | | ||||||| |||||||| |||||  ||||||||||||| ||||||||||   |||||||||||  |||  || || | |    
T  34976400 gcaaaaacttaaatcctcacacttttcaaggatcatcatacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatact 34976301  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 321  Q
    ||||||||||||| |  ||||||||||| ||||||   ||  ||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  34976300 tgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatccact 34976201  T
Q  322 g 322  Q
    |    
T  34976200 g 34976200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 322
Target Start/End: Complemental strand, 34983511 - 34983311
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    ||||||||||||||||| | | ||||||| |||||||| |||||  ||||||||||||| ||||||||||   |||||||||||  |||  || || | |    
T  34983511 gcaaaaacttaaatcctcacacttttcaaggatcatcatacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatact 34983412  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 321  Q
    ||||||||||||| |  ||||||||||| ||||||   ||  ||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  34983411 tgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatccact 34983312  T
Q  322 g 322  Q
    |    
T  34983311 g 34983311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 122 - 322
Target Start/End: Complemental strand, 40580963 - 40580763
Alignment:
Q  122 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 221  Q
    |||||||||||| |||| | | ||||||  |||||||| |||||  | ||| ||||||  ||||||||||  ||||||||||||  |||| || || | |    
T  40580963 gcaaaaacttaattcctcacacttttcatggatcatcatacgtatcaaatcgtgaacaaaacaacttttagtttttccatcaattctaattgaggatact 40580864  T
Q  222 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 321  Q
    ||||||||||| | |  ||||||||| | ||||||   ||| ||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  40580863 tgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttcttccaaagtctttccactttcctccttcacaaacccttcagctatccact 40580764  T
Q  322 g 322  Q
    |    
T  40580763 g 40580763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 320
Target Start/End: Original strand, 872126 - 872360
Alignment:
Q  87 cttaaggatgactgactgtcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaac 186  Q
    ||||||||||| || |  ||||||||||||||   ||||||| ||||||||| ||||||||||| |||||   || ||| |||||||||||||||||||     
T  872126 cttaaggatgattgtccctcttcactaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaaa 872225  T
Q  187 ttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtc-ttcc 285  Q
     |||| |||| |||||||    ||  || || | |||||||||   |||||  || ||||| | ||||||   ||| |||| ||||||  | ||| ||||    
T  872226 ctttagctttaccatcaactccaagtgatgatacttgcaccaagaatctatggataaactcggctaaatatccttctgcaaattcttcccaagtctttcc 872325  T
Q  286 ccctttcctctttcacaaacccttcagctatccac 320  Q
     ||||||||| ||||||||||||||||||||||||    
T  872326 tcctttcctccttcacaaacccttcagctatccac 872360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 320
Target Start/End: Original strand, 1233403 - 1233637
Alignment:
Q  87 cttaaggatgactgactgtcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaac 186  Q
    ||||||||||| || |  ||||||||||||||   ||||||| ||||||||| ||||||||||| |||||   || ||| |||||||||||||||||||     
T  1233403 cttaaggatgattgtccctcttcactaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaaa 1233502  T
Q  187 ttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtc-ttcc 285  Q
     |||| |||| |||||||    ||  || || | |||||||||   |||||  || ||||| | ||||||   ||| |||| ||||||  | ||| ||||    
T  1233503 ctttagctttaccatcaactccaagtgatgatacttgcaccaagaatctatggataaactcggctaaatatccttctgcaaattcttcccaagtctttcc 1233602  T
Q  286 ccctttcctctttcacaaacccttcagctatccac 320  Q
     ||||||||| ||||||||||||||||||||||||    
T  1233603 tcctttcctccttcacaaacccttcagctatccac 1233637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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