View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16551_low_41 (Length: 335)
Name: NF16551_low_41
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 108 - 319
Target Start/End: Original strand, 43527735 - 43527948
Alignment:
| Q |
108 |
attcacatttgcatttccttctcaccgtaaacgtcattaacatattcaagtggagaaatgccaacgaataatttgtccatatgttattatcaggtttctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43527735 |
attcacatttgcatttccttctcaccgtaaacgtcattaacatattcaagtggagaaatggcaacgaataatttgtccatatgttattatcaagtttctt |
43527834 |
T |
|
| Q |
208 |
tcgtcgcacttcctcactcttaatggtgggtaacttcttc--ctgttactgccatcaacaatggtcgcatatatgtgtctcatcaagcacacactagcta |
305 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43527835 |
tcgtcccacttcctcactcttaacggtgggtaacttcttcctctgttactgccatcaacaatggtcgcatatatgtgtctcatcaagcacacactagcta |
43527934 |
T |
|
| Q |
306 |
ggactctaaaattt |
319 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43527935 |
ggactctaaaattt |
43527948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 43527584 - 43527670
Alignment:
| Q |
11 |
ttatactactctatgtgcccaactatttattgaaactactaggtccatttagattaatctagtactctagttttgacctaaacactc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43527584 |
ttatactactctatgtgcccaactatttattgaaactactaggtccatttagattaatctagtactctagttttgacctaaacactc |
43527670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University