View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16551_low_42 (Length: 330)
Name: NF16551_low_42
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 27329394 - 27329646
Alignment:
| Q |
7 |
tatttcaaaattcgacccactatatcatattctatttacttcagattcatagtttgaattattatggtcaacttctcctaaaatgtgatgagttaataca |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329394 |
tatttcaaaattcgacccattatatcatattctatttacttcagattcatagtttgaattattatggtcaacttctcctaaaatgtgatgagttaataca |
27329493 |
T |
|
| Q |
107 |
aagaaaatagactagaggtagagggaacacgtctatttgctaaatagtactgctctcagacatggacaaatgttgccacaaaagtataaattctgcactc |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329494 |
aagaaaatagactagagg------gaacacgtctatttgctaaatagt---gctctcagaaatggacaaatgttgccacaaaagtataaattctgcactc |
27329584 |
T |
|
| Q |
207 |
aacaagctggctgttgcagactgtgaagagagaaaggaaagtatattgaatgttgtgctctc |
268 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329585 |
aataagctggctgttgcagactgtgaagagagaaaggaaagtatattgaatgttgtgctctc |
27329646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University