View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_43 (Length: 327)
Name: NF16551_low_43
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_43 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 49377516 - 49377209
Alignment:
| Q |
21 |
atccacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatatgatttctgtcggaacatgctccacctattaat |
120 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
49377516 |
atccacaatagcttcttgtcaatttaatgaaaaagaaacgtacctacttaacatcaagggaataatgtgatttctgtcggaacctgctccacctattaat |
49377417 |
T |
|
| Q |
121 |
aaaaaatatcgataaatcatcaacacnnnnnnngaaagattaaactatatataatgatcaagagaaaatatattactttaggcttgttcctaatcccatg |
220 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49377416 |
aaaaaatatcgataaatcatcaacattatttttgaaagattaaactatatataatgatcaagagaaaatatattactttagacttgttcctaatcccatg |
49377317 |
T |
|
| Q |
221 |
caatactcgaagccaatcaccaccacaaattaaagtttcaacggtagaagaatgcaaagaagctcggaatgagtcaataactct-cctccgacgctaaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||| || ||| |||||||| |
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| T |
49377316 |
caatactcgaagccaatcaccaccacaaattaaagtttcaatggtagaagaatgtagagaagctcgtaatgagtcaataactctccccccggcgctaaaa |
49377217 |
T |
|
| Q |
320 |
gttgactc |
327 |
Q |
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|||||||| |
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| T |
49377216 |
gttgactc |
49377209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 3804707 - 3804395
Alignment:
| Q |
16 |
catatatccacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatatgatttctgtcggaacatgctccaccta |
115 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
3804707 |
catatattcacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatgtgatttctgtcgaaacatgctccaccta |
3804608 |
T |
|
| Q |
116 |
ttaataaaaaatatcgataaatcatcaacacnnnnnnngaaagattaaactatatataatgatcaagagaaaatatattactttaggcttgttcctaatc |
215 |
Q |
| |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
3804607 |
ttcataaaaaatatcgataaatcatcaacactttttttgaaagattaaactatatataatgatcaagagaaaatacattactttaggtttgttcctaatc |
3804508 |
T |
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| Q |
216 |
ccatgcaatactcgaagccaatcaccaccacaaattaaagtttcaacggtagaagaatgcaaagaagctcggaatgagtcaataactctcctccga-cgc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| ||| |||||||||| || | ||| |
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| T |
3804507 |
ccatgcaatactcgaagccaatcaccaccacaaattaaagtttcaacggtagaagaatgtagggaagctcgaaatgggtcgataactctccccccagcgc |
3804408 |
T |
|
| Q |
315 |
taaaagttgactc |
327 |
Q |
| |
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||||||||||||| |
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| T |
3804407 |
taaaagttgactc |
3804395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 7444826 - 7445132
Alignment:
| Q |
21 |
atccacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatatgatttctgtcggaacatgctccacctattaat |
120 |
Q |
| |
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||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
7444826 |
atccacaatagcttattgtcaatttaatgaaaaagaaaagtacctacttaacatcaagggaataatgtgatttctgtcggaacctgctccacctattaat |
7444925 |
T |
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| Q |
121 |
aaaaaatatcgataaatcatcaacacnnnnnnngaaagattaaactatatataatgatcaagagaaaatatattactttaggcttgttcctaatcccatg |
220 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7444926 |
aaaaaatatcaataaatcatcaacactatttttgaaagattaaactatatataatgatcaagagaaaatatattactttaggcttgttcctaatcccatg |
7445025 |
T |
|
| Q |
221 |
caatactcgaagccaatcaccaccacaaattaaagtttcaacggtagaagaatgcaaagaagctcggaatgagtcaataactct-cctccgacgctaaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| || ||| |||||||| |
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| T |
7445026 |
caatactcgaagccaatcaccaccacaaattaaagtttcaacggtagaagaatgtagagaagctcggaat-agtcaataactctccccccggcgctaaaa |
7445124 |
T |
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| Q |
320 |
gttgactc |
327 |
Q |
| |
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|||||||| |
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| T |
7445125 |
gttgactc |
7445132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 8112296 - 8112455
Alignment:
| Q |
166 |
tatatataatgatcaagagaaaatatattactttaggcttgttcctaatcccatgcaatactcgaagccaatcaccaccacaaattaaagtttcaacggt |
265 |
Q |
| |
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|||||||||||||||||||| |||||||||||| | ||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
8112296 |
tatatataatgatcaagagatgatatattacttttgacttgttcctgtttccgtgcaatacccgaagccaatcaccaccacaaattaaagtttcaaccgt |
8112395 |
T |
|
| Q |
266 |
agaagaatgcaaagaagctcggaatgagtcaataactct-cctccgacgctaaaagttga |
324 |
Q |
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||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
8112396 |
agatgaatataaagaagctcggaatgagtcaataactctccccccgacgctaaaagttga |
8112455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 7957888 - 7958084
Alignment:
| Q |
16 |
catatatccacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatatgatttctgtcggaacatgctccaccta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7957888 |
catatatccacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatgtgatttctgtcggaacatgctccaccta |
7957987 |
T |
|
| Q |
116 |
ttaataaaaaatatcgataaatcatcaacacnnnnnnngaaagattaaactatatataatgatcaagagaaaatatattactttaggcttgttccta |
212 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7957988 |
ttaataaaaaatatcgataaattatcaacactttttttgaaagattaaactatatataacgatcaagagaaaatatattactttaggcttgttccta |
7958084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 39718415 - 39718565
Alignment:
| Q |
83 |
taatatgatttctgtcggaacatgctccacctattaataaaaaatatcgataaatcatcaacacnnnnnnngaaagattaaactatatataatgatcaag |
182 |
Q |
| |
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|||| |||||| ||||||||| |||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
39718415 |
taatgtgatttatgtcggaacctgctccacctgttaataaaatatatcaataaatcatcaacactatttttgaaagattaaactatatataataatcaag |
39718514 |
T |
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| Q |
183 |
agaaaatatattactttaggcttgttcctaatcccatgcaatactcgaagc |
233 |
Q |
| |
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| | || ||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
39718515 |
atataagttattactttagacttgtttctgatcccatgcaatactcgaagc |
39718565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 27634163 - 27634258
Alignment:
| Q |
21 |
atccacactagcttcttgtcaattaaatgaaaaagaaa-cgtacctacttaacatcaagggaataatatgatttctgtcggaacatgctccaccta |
115 |
Q |
| |
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||||||| |||||||||||||||| ||| ||||| ||| || ||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |
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| T |
27634163 |
atccacaatagcttcttgtcaatttaataaaaaaaaaaacgcacctacttaacatcaagggaataatgtgatttctgttagaacctgctccaccta |
27634258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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