View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_48 (Length: 284)
Name: NF16551_low_48
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_48 |
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| [»] scaffold0743 (1 HSPs) |
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| [»] scaffold1104 (1 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 6156 - 6416
Alignment:
| Q |
18 |
tgttttgcattgaattcaatgtgatgagcttgcttccaaagacctagccatctttttgagaggatgttgcatctcacagcttcgtcaacatgaagtttgg |
117 |
Q |
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| T |
6156 |
tgttttgcattgaattcaatgtgatgagcttgcttccatagacctagccatctttttgagaggatgttgcatctcacagcttcgtcaacatgaagtttgg |
6255 |
T |
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| Q |
118 |
aaaggatgaaggttaagacatcatttggaagcttgttgataaaatctagtttctcatcactcataaccaccatcatttccatctc----tttctattgca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| | ||||||||| |
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| T |
6256 |
aaaggatgaaggttaagacatcatttggaagcttgttgataaactcttgtttctcatcactcataaccaccatcttttccatctccatgtctctattgca |
6355 |
T |
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| Q |
214 |
ccctctctctttccctcaaccttttaagtgcaagaataagaaaatatcttacatttagtct |
274 |
Q |
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| T |
6356 |
ccctctctcaatccctcaaccttttaagtgcaagaataagaaaatatcttacatttagtct |
6416 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 30375058 - 30375101
Alignment:
| Q |
231 |
aaccttttaagtgcaagaataagaaaatatcttacatttagtct |
274 |
Q |
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| T |
30375058 |
aaccttttaagtgcaagaataagaaaatatcttacatttagtct |
30375101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 30376911 - 30376954
Alignment:
| Q |
231 |
aaccttttaagtgcaagaataagaaaatatcttacatttagtct |
274 |
Q |
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| T |
30376911 |
aaccttttaagtgcaagaataagaaaatatcttacatttagtct |
30376954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 30374894 - 30374924
Alignment:
| Q |
205 |
tctattgcaccctctctctttccctcaacct |
235 |
Q |
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| T |
30374894 |
tctattgcaccctctctctttccctcaacct |
30374924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 30376747 - 30376777
Alignment:
| Q |
205 |
tctattgcaccctctctctttccctcaacct |
235 |
Q |
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| T |
30376747 |
tctattgcaccctctctctttccctcaacct |
30376777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 279 - 247
Alignment:
| Q |
17 |
atgttttgcattgaattcaatgtgatgagcttg |
49 |
Q |
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| T |
279 |
atgttttgcattgaattcaatgtgatgagcttg |
247 |
T |
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