View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_49 (Length: 281)
Name: NF16551_low_49
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9336799 - 9337043
Alignment:
| Q |
1 |
ccattctgataacattattcttcgcactcaagccctagctatctctaccaatgcgcacccaat----gacgtgggaagccctaatgtcgaaaaagtatct |
96 |
Q |
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| T |
9336799 |
ccattctgataacattattcttcgcactcaagccctagctatctctaccaatgcgcacccaattaatgacgtgggaagccctaatgtcggaaaagtatct |
9336898 |
T |
|
| Q |
97 |
taatatatataacttatgactacacttttctactttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatataccataccg |
196 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9336899 |
taatat--ataacttatgactacacttttctactttcaccaccaacccacttccatttggattgaaatattgttgcttccaaaattgatatactgtaccg |
9336996 |
T |
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| Q |
197 |
tactaaaacannnnnnnnaagccacaaaggccctagcaattcctttc |
243 |
Q |
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| T |
9336997 |
tactaaaacatttcttttaagccacacgggccctagcaattcctttc |
9337043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 40147912 - 40147851
Alignment:
| Q |
128 |
actttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatatacc |
190 |
Q |
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| T |
40147912 |
actttcaccaataaacaacttccattttgattgaaa-attgcagcttccaaaattgatatacc |
40147851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 14138994 - 14139055
Alignment:
| Q |
127 |
tactttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatata |
188 |
Q |
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| T |
14138994 |
tacttttaccactaaaccacttctgtttttgttgaaatattgttgtttccaaaattgatata |
14139055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 35918243 - 35918181
Alignment:
| Q |
128 |
actttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatatacc |
190 |
Q |
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|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
35918243 |
actttcaccactaaaccacttccattttgattgaaaaattgttgcttccaaaattgatatacc |
35918181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 7713489 - 7713547
Alignment:
| Q |
130 |
tttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatata |
188 |
Q |
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|||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||||| |
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| T |
7713489 |
tttcaccactaagccactttcattttaattgaaatattgctgcttccaaaattgatata |
7713547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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