View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_52 (Length: 274)
Name: NF16551_low_52
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 44307332 - 44307601
Alignment:
| Q |
1 |
taacttgacgagatcaacaaatccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
100 |
Q |
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| T |
44307332 |
taacttgacgagatcaacaaatccaatataacaatcgtcaatgcttcgtaatggaacttgaattgcagcacagcgatgattaagcttagattttacttga |
44307431 |
T |
|
| Q |
101 |
tcaaaaaagtttcatggatctgctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatgg |
200 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44307432 |
tcaaaaaagttccatggatctgctccttccagctcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatgg |
44307531 |
T |
|
| Q |
201 |
tttcaattttaacaccataaagacaagaaagaacaagaactgcactgtcgaaaatatgcaaaggtatttc |
270 |
Q |
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| T |
44307532 |
tttcaattttaacaccataaagacaagaaagaacaggaactgcactgtcgaaaatatgcaaaggtatttc |
44307601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 44317505 - 44317757
Alignment:
| Q |
1 |
taacttgacgagatcaacaaatccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
100 |
Q |
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| T |
44317505 |
taacttaacaagatcaacaaatccaatataacaatcgtcaatgt---gtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
44317601 |
T |
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| Q |
101 |
tcaaaaaagtttcatggatctgctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatgg |
200 |
Q |
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|| | || ||| ||| |||||||||||||| | || |||||| |||||||||| | |||||| |||||||||||||||||||||| ||| | ||||| |
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| T |
44317602 |
tctacaatgttccatagatctgctccttcctcataaagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgg |
44317701 |
T |
|
| Q |
201 |
tttcaattttaacaccataaagacaagaaagaacaagaactgcactgtcgaaaata |
256 |
Q |
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||| || ||||||||| || ||||||||||||||||| ||||||||| |||||| |
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| T |
44317702 |
attcggttctaacaccattaacacaagaaagaacaagaattgcactgtcaaaaata |
44317757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 270
Target Start/End: Original strand, 44302256 - 44302378
Alignment:
| Q |
148 |
aaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaagacaagaaagaacaagaactgcactg |
247 |
Q |
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|||||||| | ||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||| || |||||||||||||||||| ||||||| |
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| T |
44302256 |
aaatataagccttggaaattgaaatcttgtcatttgttgataaatagcaatggattcatttttaacacaatctcgacaagaaagaacaagaattgcactg |
44302355 |
T |
|
| Q |
248 |
tcgaaaatatgcaaaggtatttc |
270 |
Q |
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|||||||||||||||| |||||| |
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| T |
44302356 |
tcgaaaatatgcaaagttatttc |
44302378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 43896914 - 43896969
Alignment:
| Q |
49 |
tattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatcaa |
104 |
Q |
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| T |
43896914 |
tattggaacttgaattgcagcacaacgatgattaagcttagatattacttgatcaa |
43896969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44302161 - 44302249
Alignment:
| Q |
1 |
taacttgacgagatcaacaaatccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagatt |
92 |
Q |
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||||| ||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
44302161 |
taactcgacaagatcaacaaatccaatataagaatcgtgaatgt---gtattggaacttgaattgcagcacaatgatgattaagcgtagatt |
44302249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 43897020 - 43897061
Alignment:
| Q |
146 |
ataaatataaacattggaaattgaaatcttgtcatttgttga |
187 |
Q |
| |
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|||||||||| | ||||||||||||||||||||||||||||| |
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| T |
43897020 |
ataaatataagccttggaaattgaaatcttgtcatttgttga |
43897061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 4084969 - 4085224
Alignment:
| Q |
1 |
taacttgacgagatcaacaaatccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
100 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084969 |
taacttaacaagatcaacaaatccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
4085068 |
T |
|
| Q |
101 |
tcaaaaaagtttcatggatctgctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatgg |
200 |
Q |
| |
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|| | | ||| ||| |||||||||||| | |||| |||||| |||||||||| | |||||| |||||||||||||||||||||| ||| ||||| |
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| T |
4085069 |
tctacgatgttccatagatctgctcctttctgatcaagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaataataatgg |
4085168 |
T |
|
| Q |
201 |
tttcaattttaacaccataaagacaagaaagaacaagaactgcactgtcgaaaata |
256 |
Q |
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||| | |||||||||| ||||||||||||||||| || |||||||||||||||| |
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| T |
4085169 |
attcggtcttaacaccatcaagacaagaaagaacaataattgcactgtcgaaaata |
4085224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 8158511 - 8158266
Alignment:
| Q |
1 |
taacttgacgagatcaacaaatccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
100 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8158511 |
taacttgacaagatcaacaaatccaacataacaatcgtcaatgcat---attggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
8158415 |
T |
|
| Q |
101 |
tcaaaaaagtttcatggatctgctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatgg |
200 |
Q |
| |
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|| | || ||| ||||||||||||||| || |||| ||||| |||||||||| | |||||| |||||||||||||||||||||| ||| | ||||| |
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| T |
8158414 |
tctacaacgttccatggatctgctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgg |
8158315 |
T |
|
| Q |
201 |
tttcaattttaacaccataaagacaagaaagaacaagaactgcactgtc |
249 |
Q |
| |
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||| |||||||||||| |||||||||||||||||| ||||||||| |
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| T |
8158314 |
attcggttttaacaccatctcgacaagaaagaacaagaattgcactgtc |
8158266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 18702462 - 18702714
Alignment:
| Q |
1 |
taacttgacgagatcaacaaatccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18702462 |
taacttgacaagatcaacaaatccaatataataatcgttaaagt---gtattggaacttgaattgcagcacaacgatgattaagcttagattttacttga |
18702558 |
T |
|
| Q |
101 |
tcaaaaaagtttcatggatctgctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatgg |
200 |
Q |
| |
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|| | || ||| ||| |||||||||||||| | | |||||| |||||||||| | | |||| |||||||||||||||||||||| || | ||||| |
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|
| T |
18702559 |
tctacaatgttccatagatctgctccttcctgatacagatcgtcaataaatataagcctaggaagttgaaatcttgtcatttgttgatccatagtaatgg |
18702658 |
T |
|
| Q |
201 |
tttcaattttaacaccataaagacaagaaagaacaagaactgcactgtcgaaaata |
256 |
Q |
| |
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|| |||||||||||| || ||||||||||||||||| |||||||||||||||| |
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|
| T |
18702659 |
atttggttttaacaccatcaacacaagaaagaacaagaattgcactgtcgaaaata |
18702714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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