View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_55 (Length: 263)
Name: NF16551_low_55
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 14200280 - 14200529
Alignment:
| Q |
1 |
ggattctaacttttaaattgtttgttttaaaatattttctaagttgcaatatataattatcgtgtccaatgatataatgtgactgctgaaatgttgaata |
100 |
Q |
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| T |
14200280 |
ggattctaacttttaaattgtttgttttaaaatattttctaagttgcaatatataattatcgtgtccaatgatataatgtgactgctgaaatgttgaata |
14200379 |
T |
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| Q |
101 |
ttaattgctttt-----atgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctccttaccatgttttacggcttcg |
195 |
Q |
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| T |
14200380 |
gtaattgcttttattttatgcacacacgtttttgtatgataatacgaagttgatttatgtccttatatttccccgctccttaccatgttttacgacttcg |
14200479 |
T |
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| Q |
196 |
ctcaatgcatttgaactggacatgtatgagttctttgtaattgtgggttg |
245 |
Q |
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| T |
14200480 |
ctcaatgcatttgaactggacatgtatgagttctttgtaagtgtgggttg |
14200529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 24641924 - 24641782
Alignment:
| Q |
81 |
gactgctgaaatgttgaatattaattgcttttatgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctccttacca |
180 |
Q |
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| T |
24641924 |
gactgcttaaattgtgaacattaattgcttttatgcacacatgttcttgtattatcatacaaagttagtttatgtccttttattgccctgctccttaccg |
24641825 |
T |
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| Q |
181 |
tgttttacggcttcgctcaatgcatttgaactggacatgtatg |
223 |
Q |
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| T |
24641824 |
ttttttatggcttcgatcgatgcatttgagctggatatgtatg |
24641782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 27061430 - 27061301
Alignment:
| Q |
94 |
ttgaatattaattgcttttatgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctccttaccatgttttacggctt |
193 |
Q |
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||||| ||| |||||||||||| ||||| ||| |||||| || |||| ||||| | ||||||||| |||| ||| |||||||||| | |||| ||||| |
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| T |
27061430 |
ttgaacattgattgcttttatgaacacatgttcttgtattatcatacaaagttagtttatgtccttttattgccctgctccttacctttgtttatggctt |
27061331 |
T |
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| Q |
194 |
cgctcaatgcatttgaactggacatgtatg |
223 |
Q |
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| T |
27061330 |
tgatcagtgcatttgagctggatatgtatg |
27061301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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