View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_56 (Length: 263)
Name: NF16551_low_56
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42442572 - 42442818
Alignment:
| Q |
1 |
ggttgcggactttcatagataattgttgaatgctctttatcccttaaatcaaaaatcctaacagacccatcagcagaaaccgaagcaaaaacccttgatt |
100 |
Q |
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| T |
42442572 |
ggttgcggactttcatagataattgttgaatgctctttatcccttaaatcaaaaatcctaacagacccatcagcagaaaccgaagcaaaaacccttgatt |
42442671 |
T |
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| Q |
101 |
ccccccaagcaatatcataaacctctttatcatgcgcaattaactgcgtttcaacaacgcctctttcaatgtcccagatagtacaagtagtgtcaatact |
200 |
Q |
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| T |
42442672 |
ccccccaagcaatatcataaacctctttatcatgcgcaattaactgcgtttcaacaacgcctctttcaatgtcccagatagtacaagtagtgtcaatact |
42442771 |
T |
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| Q |
201 |
tgaagttccaattcgtttgggctcaatttcattccaatcaaatgatg |
247 |
Q |
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| T |
42442772 |
tgaagttccaattcgtttgggctcaatttcattccaatcaaatgatg |
42442818 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 32738386 - 32738573
Alignment:
| Q |
28 |
gaatgctctttatcccttaaatcaaaaatcctaacagacccatcagcagaaaccgaagcaaaaacccttgattccccccaagcaatatcataaacctctt |
127 |
Q |
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||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||||| | | |||||||| |||||||||||||||| |
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| T |
32738386 |
gaatgttctttatcacgtaaatcaaaaaccctaacagacccatcagcagaaaccgatgcaaaaacaccaacaccaccccaagctatatcataaacctctt |
32738485 |
T |
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| Q |
128 |
tatcatgcgcaattaactgcgtttcaacaacgcctctttcaatgtcccagatagtacaagtagtgtcaatacttgaagttccaattcg |
215 |
Q |
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| T |
32738486 |
tatcatgggcaattaactgcgtatcaacggtttctttctcaatatcccaaatagtacacgttgtatcaatactggaagtaccaattcg |
32738573 |
T |
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