View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16551_low_58 (Length: 251)

Name: NF16551_low_58
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16551_low_58
NF16551_low_58
[»] chr7 (12 HSPs)
chr7 (2-243)||(36217021-36217262)
chr7 (2-215)||(35977873-35978086)
chr7 (2-215)||(35999285-35999498)
chr7 (2-225)||(35958418-35958641)
chr7 (2-213)||(35947213-35947424)
chr7 (2-213)||(35982441-35982652)
chr7 (2-213)||(36003853-36004064)
chr7 (2-243)||(36221014-36221247)
chr7 (2-217)||(36226320-36226535)
chr7 (86-215)||(35926238-35926370)
chr7 (54-215)||(35973791-35973952)
chr7 (54-215)||(35995203-35995364)
[»] chr1 (1 HSPs)
chr1 (8-204)||(18126138-18126334)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 36217262 - 36217021
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217262 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 36217163  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217162 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 36217063  T
Q  202 ccttaaccattcacacaaggcatgttgccggttcttcttctc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36217062 ccttaaccattcacacaaggcatgttgccggttcttcttctc 36217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 35977873 - 35978086
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  35977873 gccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgtaccttca 35977972  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
     |||| |||||| ||||||||  |||| |||||||| | |||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||    
T  35977973 cccgtctgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatattttgaatctg 35978072  T
Q  202 ccttaaccattcac 215  Q
    ||| | ||||||||    
T  35978073 cctcagccattcac 35978086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 35999285 - 35999498
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  35999285 gccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgtaccttca 35999384  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
     |||| |||||| ||||||||  |||| |||||||| | |||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||    
T  35999385 cccgtctgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatattttgaatctg 35999484  T
Q  202 ccttaaccattcac 215  Q
    ||| | ||||||||    
T  35999485 cctcagccattcac 35999498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 35958418 - 35958641
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| |||||||||||||| |||||||||||||||||  | | |||  |||||||||||||||| | ||||||||||||||| ||||||| ||||||||    
T  35958418 gccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtaccttca 35958517  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
     ||||||||||||||||||||| |||| ||| |||| | |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||    
T  35958518 cccgtgtgcttccagaagcttccacaacttgttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagcatatattttgaatctg 35958617  T
Q  202 ccttaaccattcacacaaggcatg 225  Q
    ||| | |||||||| |||| ||||    
T  35958618 cctcagccattcacgcaagccatg 35958641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 35947213 - 35947424
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||  || |||||    
T  35947213 gccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggactaacttca 35947312  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
     ||||||||||| ||||||||  |||| |||||||| | |||||||||| | ||||||||||||||||||||||||||||| ||| || || ||||||||    
T  35947313 cccgtgtgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatggcaaatattctgaatctg 35947412  T
Q  202 ccttaaccattc 213  Q
    ||| | ||||||    
T  35947413 cctcagccattc 35947424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 35982441 - 35982652
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| ||||| |||||||  ||||| ||||||||| || ||| |||||||| ||| |||||||| ||||||||||||||||||||||||| |||||||     
T  35982441 gccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcg 35982540  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
     ||| ||||| |||||||||||||||| ||||||||   ||||||| |||||||||||||  |||||||||||||||||| |||| |||  |||||||||    
T  35982541 tccgagtgctgccagaagcttcaacaacttgctttcgtttgtcttgaaactcaaatccattgaatacatcttcagcatcagagcaaatgcattgaatctg 35982640  T
Q  202 ccttaaccattc 213  Q
    ||| | ||||||    
T  35982641 cctcagccattc 35982652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 36003853 - 36004064
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| ||||| |||||||  ||||| ||||||||| || ||| |||||||| ||| |||||||| ||||||||||||||||||||||||| |||||||     
T  36003853 gccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcg 36003952  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
     ||| ||||| |||||||||||||||| ||||||||   ||||||| |||||||||||||  |||||||||||||||||| |||| |||  |||||||||    
T  36003953 tccgagtgctgccagaagcttcaacaacttgctttcgtttgtcttgaaactcaaatccattgaatacatcttcagcatcagagcaaatgcattgaatctg 36004052  T
Q  202 ccttaaccattc 213  Q
    ||| | ||||||    
T  36004053 cctcagccattc 36004064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 36221247 - 36221014
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||    
T  36221247 gccaccttattcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggcataccttca 36221148  T
Q  102 accgtgtgcttccagaagcttcaacaa-attgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatct 200  Q
      || ||||| ||||||||||  ||||  ||  ||| || ||||||||||||||||||         |||||||||||||||||||||||||||| | ||    
T  36221147 ttcgagtgctgccagaagctttcacaattttattttttcttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgtacct 36221057  T
Q  201 gccttaaccattcacacaaggcatgttgccggttcttcttctc 243  Q
    |||| |||||||||| ||  ||||||||  |||||||||||||    
T  36221056 gcctcaaccattcacgcagagcatgttgttggttcttcttctc 36221014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 36226320 - 36226535
Alignment:
Q  2 gccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 101  Q
    ||||| |||| ||||||||| ||||||||||||||| ||| || |||| |||||||||||||||| ||| ||||||||||||| || |||| ||||||||    
T  36226320 gccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactagaggaagaaaaaaattggcgtaccttca 36226419  T
Q  102 accgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctg 201  Q
     ||  ||||| |  |||||||| |||| ||||||||   ||||||| || ||||||||||||| ||||| |||||||||| |||| |||| |||||||||    
T  36226420 tcctagtgctgcatgaagcttccacaacttgctttcgtttgtcttgaaattcaaatccatccagtacatattcagcatcagagcaaatgtattgaatctg 36226519  T
Q  202 ccttaaccattcacac 217  Q
    ||| | ||||||||||    
T  36226520 cctcagccattcacac 36226535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 35926238 - 35926370
Alignment:
Q  86 aagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactc---aaatccatccaatacatcttcagcatcat 182  Q
    ||||||| |||||||| | ||||||| ||||||||||  || | |||||||| | |||||||||| ||   ||||||||||| |||||||||||||||||    
T  35926238 aagtggcgtaccttcaccagtgtgctaccagaagctttgaccacttgctttcgcttgtcttgcaagtcgtcaaatccatccattacatcttcagcatcat 35926337  T
Q  183 agcagatgttttgaatctgccttaaccattcac 215  Q
    |||| || |||||||||||||| | ||||||||    
T  35926338 agcatatattttgaatctgcctcagccattcac 35926370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 35973791 - 35973952
Alignment:
Q  54 aacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactc 153  Q
    |||||||| |||| ||||| ||||| |||||||||| || ||||||||  |  ||||| |||||||| || |||||||  || | | ||| ||| |  ||    
T  35973791 aacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgtgctgccagaagcatccacaaattttttccgcttgtgttggagttc 35973890  T
Q  154 aaatccatccaatacatcttcagcatcatagcagatgttttgaatctgccttaaccattcac 215  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||||||| | ||||||||    
T  35973891 aaatccatcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcac 35973952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 35995203 - 35995364
Alignment:
Q  54 aacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactc 153  Q
    |||||||| |||| ||||| ||||| |||||||||| || ||||||||  |  ||||| |||||||| || |||||||  || | | ||| ||| |  ||    
T  35995203 aacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgtgctgccagaagcatccacaaattttttccgcttgtgttggagttc 35995302  T
Q  154 aaatccatccaatacatcttcagcatcatagcagatgttttgaatctgccttaaccattcac 215  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||||||| | ||||||||    
T  35995303 aaatccatcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcac 35995364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 18126138 - 18126334
Alignment:
Q  8 ttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtg 107  Q
    |||||||||||||| ||||| ||||| |||||   || |||||||| ||| |||||||| | ||| |||||| | |||||||||| ||||||||  |       
T  18126138 ttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattggaggaacagaagaagtggcgtaccttcattctat 18126237  T
Q  108 tgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctgcct 204  Q
    | || |  |||||||  | || |||||||| | ||| ||| | |||||||   ||||||||||||||||||||||||||||| ||||| ||||||||    
T  18126238 tactacacgaagctttgagaacttgctttcgcttgtgttggagctcaaatttttccaatacatcttcagcatcatagcagatattttgtatctgcct 18126334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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