View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_6 (Length: 720)
Name: NF16551_low_6
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 355 - 708
Target Start/End: Complemental strand, 39488616 - 39488275
Alignment:
| Q |
355 |
cgcaatgccttcagtttttaggttctgatagtgttttttcgacttgtttcaaggctgattgctgttgttctgtattaggaatttgcaggagtatgttttc |
454 |
Q |
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| T |
39488616 |
cgcaatgccttcagtttttaggttctgatagagttttttcgacttgtttcaaggctgattgctgttgttctgtattaggaatttgcaggagtatgttttc |
39488517 |
T |
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| Q |
455 |
taagtcatttgctttgggatgtcaataaaatttgtcaattaatttagctattnnnnnnnntt-aaaagtatatgaagaagcaaatagaagttttattcaa |
553 |
Q |
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| T |
39488516 |
taagtcatttgctttgggatgtcaataaaatttgtcaattaatttagctattaaaaaaaattaaaaagtatatgaagaagcaaatagaagttttattcaa |
39488417 |
T |
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| Q |
554 |
tatcagtgttaactattcagattagatgacagcttttctcatttttcagccgcaccttcatgttaccagcaaaagaataacacaatcaaggcatgatgca |
653 |
Q |
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| T |
39488416 |
tatcagtgttaactattcagattatatg-------------tttttcagccgcaccttcatgttacgagcaaaataataacacaatcaaggcatgatgca |
39488330 |
T |
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| Q |
654 |
tgtacagaaacatatgtgattttcttcacagaaactaacaaaacagatattcttc |
708 |
Q |
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| T |
39488329 |
tgtacagaaacatatgtgattttcttcacagaaactaacaaaacggatattcttc |
39488275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 39488997 - 39488736
Alignment:
| Q |
18 |
gtgtgcttctttaattccgttaataaattccttgtcatcatttaacaaaccaagagcataacacgcttcttaaaaggaatcactaaattcacgggggaaa |
117 |
Q |
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| T |
39488997 |
gtgtgcttctttaattccgttaataaattccttgtcatcatttaacaaaccaagagcataacacgcttcttaaaaggaatcactaaat------------ |
39488910 |
T |
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| Q |
118 |
taatgtggtactttgatggctgagactgattttaccaattacaccagannnnnnncaaatcattatctagcttcatcgggttgtcggttgggaagaagag |
217 |
Q |
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| T |
39488909 |
-aatgtggtactttgatggctgagactgattttaccaattacaccagatttttttcaaatcattatctagcttcatcgggttgtcggttgggaagaagag |
39488811 |
T |
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| Q |
218 |
tgaaagaaggttgatgttaattttttacattattatgtgggtgttatggaaagcacaaaatgactggatcttcaa |
292 |
Q |
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| T |
39488810 |
tgaaagaaggttgatgttaattttttacattattatgtgggtgttatggaaagcacaaaatgactggatcttcaa |
39488736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 39488697 - 39488643
Alignment:
| Q |
289 |
tcaaagaaatggcatggcattggtttttagctagtctggcaaagtcgtctcttta |
343 |
Q |
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| T |
39488697 |
tcaaagagatggcatggcattggtttttagctagtctggcaaagtcgtctcttta |
39488643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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