View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_60 (Length: 250)
Name: NF16551_low_60
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 42465258 - 42465054
Alignment:
| Q |
31 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
130 |
Q |
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| T |
42465258 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
42465159 |
T |
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| Q |
131 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatc----cagaggattatcaattctttcacagctgcacgttg |
226 |
Q |
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| T |
42465158 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatcctctcagaggattaacaattctttcacagctgcacgttg |
42465059 |
T |
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| Q |
227 |
ttaat |
231 |
Q |
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||||| |
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| T |
42465058 |
ttaat |
42465054 |
T |
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