View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16551_low_9 (Length: 646)
Name: NF16551_low_9
Description: NF16551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16551_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 154 - 639
Target Start/End: Complemental strand, 6706082 - 6705597
Alignment:
| Q |
154 |
tggcttcaattaagcataggtaatacggccgtgaccacaaccacgaaacatggtcgtgatcataaccagactccaacaagcagttcaggcttgttggagc |
253 |
Q |
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| T |
6706082 |
tggcttcaattaagcataggtaatacggccgtgaccacaaccacgaaacatggtcgtgatcataaccagactccaacaagcagttcaggcttgctggagc |
6705983 |
T |
|
| Q |
254 |
ttgagttgttaccaacaaattgggctgcttcgcggcccaatttggagcaaccatcgaccagaggttgctcaaattttaattcttctttgtttttcgaaca |
353 |
Q |
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| T |
6705982 |
ttgagttgttaccaacaaattgggctgcttcgcggcccaatttggagcaaccatcgaccagaggttgctcaaattttaattcttctttgttttttgaaca |
6705883 |
T |
|
| Q |
354 |
aacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatggtcatcaacaacaacatcaacatctagtacca |
453 |
Q |
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| T |
6705882 |
aacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatggtcatcaacaacaacatcaacatctagtacca |
6705783 |
T |
|
| Q |
454 |
cataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacagcttatgttccatcttcttctttatcacaatcttgtt |
553 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
6705782 |
cataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacatcttatattccatcttcttctttatcacaatcttgtt |
6705683 |
T |
|
| Q |
554 |
cttctttaaggccatctttaggacctaattattatcctcaatatcatcatgcatcaccctttcactttccttcatcttcttcatct |
639 |
Q |
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| T |
6705682 |
cttctttaaggccatctttaggacctaattattatcctcaatatcatcatgcatcaccctttcactttccttcatcttcttcatct |
6705597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6706235 - 6706155
Alignment:
| Q |
1 |
agacttaacactatcaccaccactactcatcacaacgaacttgaacccgaacccgaaggagaaaccatttcaacctcaaag |
81 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6706235 |
agactcaacactatcaccaccactactcatcacaacgaacttgaacccgaacccgaaggagaaaccatttcaacctcaaag |
6706155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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