View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16552_high_17 (Length: 239)
Name: NF16552_high_17
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 23784612 - 23784825
Alignment:
| Q |
18 |
aggatcacctaacaaaaaattgttctacctatgaatcgaaggcgggttcccttgaacgattcgtctatagtaaagttcattaaccacttaagctcaattg |
117 |
Q |
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| T |
23784612 |
aggatcacctgacaaaaaaaatttctacctatgaatcgaacgtgggttccgttgaacgattcgtctttagtaaagctcattaaccacttaagctcaattg |
23784711 |
T |
|
| Q |
118 |
cttggttaatcaaaaacaaattttaccacacgagcggtgcaaaagataaatgaaaaaagaagataaccttcaatttttccatgtgaaacgcagggttgat |
217 |
Q |
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| T |
23784712 |
cttggttaatcaaaaacaaattttaccacacgagtagtgcaaaagataaatgaaaaaagaagataaccttcaatttttccatgtgaaacgcagggttgat |
23784811 |
T |
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| Q |
218 |
tattctcctatgct |
231 |
Q |
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|||||| ||||||| |
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| T |
23784812 |
tattcttctatgct |
23784825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 23767353 - 23767302
Alignment:
| Q |
180 |
ataaccttcaatttttccatgtgaaacgcagggttgattattctcctatgct |
231 |
Q |
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| T |
23767353 |
ataaccttcaatttttccatgtgaaaagcagggttgattatccttctatgct |
23767302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 38021537 - 38021439
Alignment:
| Q |
29 |
acaaaaaattgttctacctatgaatcgaaggcgggttcccttgaacgattcgtctatagtaaagttcattaaccacttaagctcaattgcttggttaat |
127 |
Q |
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| T |
38021537 |
acaaacaaatgttctacctaggaatcgaactcaggttctctcaaatgatttgtctttcgtaaagttcattaaccatttgagctcaattgcttggttaat |
38021439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 33498017 - 33498058
Alignment:
| Q |
93 |
ttcattaaccacttaagctcaattgcttggttaatcaaaaac |
134 |
Q |
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| T |
33498017 |
ttcattaaccacttaagctcaattgtttggttaatctaaaac |
33498058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 10449186 - 10449229
Alignment:
| Q |
86 |
agtaaagttcattaaccacttaagctcaattgcttggttaatca |
129 |
Q |
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| T |
10449186 |
agtaaagttcattaaccacttaaactcaattgtttggtttatca |
10449229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 24863009 - 24863065
Alignment:
| Q |
72 |
aacgattcgtctatag-taaagttcattaaccacttaagctcaattgcttggttaat |
127 |
Q |
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| T |
24863009 |
aacgattcgtctattgatataattcattaaccacttaagttcaattgtttggttaat |
24863065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 37064124 - 37064158
Alignment:
| Q |
91 |
agttcattaaccacttaagctcaattgcttggtta |
125 |
Q |
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| T |
37064124 |
agttcattaaccacttcagctcaattgcttggtta |
37064158 |
T |
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