View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16552_high_2 (Length: 431)
Name: NF16552_high_2
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 42 - 416
Target Start/End: Original strand, 44093233 - 44093612
Alignment:
| Q |
42 |
tcagtgaataaacgtaacaactacatacatgattaaatgaagaacaaaggattatacctacttcctcaagaacccagatgggtcaaacaaactctggcac |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44093233 |
tcagtgaataaacgtaacaactacatacatgattaaatgaagaacaaaggattatacctacttcctcaagaacccagatgcgtcaaacaaactctggcac |
44093332 |
T |
|
| Q |
142 |
atcacaattttctggctgccagcggtatccttcaaatgtgaaatctgctcgttttgtccgtctacatggccacattggggataaccattgtttacaacca |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44093333 |
atcacaattttctggctgccagcggtatccttcaaatgtgaaatctgctcgttttgtccgtctacatggccacattggggataaccattgtttacagcca |
44093432 |
T |
|
| Q |
242 |
aacccagaatacatggtctctttttgtccgcagtagttaatctaccattgtccattggcataattac-----aaactgcagaagagaaatgttgatcaga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44093433 |
aacccagaatacatggtctctttttgtccgcagtagttaatctaccattgtccattggcataattacaaattaaactgcagaagagaaatgttgatcaga |
44093532 |
T |
|
| Q |
337 |
caccaaatttgtaaaaagacttcagaatcaggagatacatacacccaggataaaagcaacatataaaatggcaaccaact |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44093533 |
caccaaatttgtaaaaagacttcagaatcaggagatacatacacccaggataaaagcaacatataaaatggcaaccaact |
44093612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 39279042 - 39279203
Alignment:
| Q |
87 |
aaaggattatacctacttcctcaagaacccagatgggtcaaacaaactctggcacatcacaattttctggctgccagcggtatccttcaaatgtgaaatc |
186 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||| |||||||| ||| ||| ||||||||| | |||||||||||||||||| ||||||| |||| |
|
|
| T |
39279042 |
aaagaattatacctactttctcaagaacttagatcggtcaaac----tcttgcatatcacaattctttggctgccagcggtatccctcaaatgaaaaatt |
39279137 |
T |
|
| Q |
187 |
tgctcgttttgtccgtctacatggccacattggggataaccattgtttacaaccaaacccagaata |
252 |
Q |
| |
|
|| ||||| |||| |||||||| |||||||| |||||||| || ||||| || || |||||||| |
|
|
| T |
39279138 |
tggtcgttgtgtcattctacatgaccacattgatgataaccactgcttacagccgaaaccagaata |
39279203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University